Files in shazanfar/scHOT

single-cell higher order testing

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

NAMESPACE

R/build.R R/data.R R/higherOrderFunctions.R R/scHOT.R R/scHOT_class.R R/scHOT_functions.R R/scHOT_plot.R README.md

_pkgdown.yml

data/MOB_subset.rda

data/liver.rda

docs/404.html

docs/articles/index.html

docs/articles/scHOT.html

docs/articles/scHOT_files/figure-html/unnamed-chunk-10-1.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-10-2.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-11-1.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-11-2.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-17-1.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-22-1.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-27-1.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-27-2.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-28-1.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-28-2.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-3-1.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-3-2.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-31-1.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-31-2.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-4-1.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-4-2.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-5-1.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-5-2.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-6-1.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-7-1.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-8-1.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-8-2.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-9-1.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-9-2.png

docs/articles/scHOT_files/figure-html/unnamed-chunk-9-3.png

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/MOB_subset.html

docs/reference/Rplot001.png

docs/reference/Rplot002.png

docs/reference/figures/scHOT_hex.png

docs/reference/index.html

docs/reference/liver.html

docs/reference/params-set.html

docs/reference/plotColouredExpression-1.png

docs/reference/plotColouredExpression.html

docs/reference/plotEgoNetwork.html

docs/reference/plotHigherOrderSequence-1.png

docs/reference/plotHigherOrderSequence-2.png

docs/reference/plotHigherOrderSequence.html

docs/reference/plotOrderedExpression.html

docs/reference/positionColData-set.html

docs/reference/positionType-set.html

docs/reference/scHOT-class.html

docs/reference/scHOT.html

docs/reference/scHOT_addTestingScaffold.html

docs/reference/scHOT_buildFromMatrix.html

docs/reference/scHOT_buildFromSCE.html

docs/reference/scHOT_calculateGlobalHigherOrderFunction.html

docs/reference/scHOT_calculateHigherOrderTestStatistics.html

docs/reference/scHOT_estimatePvalues.html

docs/reference/scHOT_output-set.html

docs/reference/scHOT_performPermutationTest.html

docs/reference/scHOT_plotPermutationDistributions.html

docs/reference/scHOT_setPermutationScaffold.html

docs/reference/scHOT_setWeightMatrix.html

docs/reference/scHOT_stripOutput.html

docs/reference/spatialWeightMatrix.html

docs/reference/testingScaffold-set.html

docs/reference/thin.html

docs/reference/trajectoryWeightMatrix.html

docs/reference/weightMatrix-set.html

docs/reference/weightedPearson.html

docs/reference/weightedSpearman.html

docs/reference/weightedVariance.html

docs/reference/weightedZIKendall.html

docs/reference/weightedZISpearman.html

docs/sitemap.xml

man/MOB_subset.Rd

man/figures/scHOT_hex.png

man/liver.Rd man/params-set.Rd man/plotColouredExpression.Rd man/plotEgoNetwork.Rd man/plotHigherOrderSequence.Rd man/plotOrderedExpression.Rd man/positionColData-set.Rd man/positionType-set.Rd man/scHOT-class.Rd man/scHOT.Rd man/scHOT_addTestingScaffold.Rd man/scHOT_buildFromMatrix.Rd man/scHOT_buildFromSCE.Rd man/scHOT_calculateGlobalHigherOrderFunction.Rd man/scHOT_calculateHigherOrderTestStatistics.Rd man/scHOT_estimatePvalues.Rd man/scHOT_output-set.Rd man/scHOT_performPermutationTest.Rd man/scHOT_plotPermutationDistributions.Rd man/scHOT_setPermutationScaffold.Rd man/scHOT_setWeightMatrix.Rd man/scHOT_stripOutput.Rd man/spatialWeightMatrix.Rd man/testingScaffold-set.Rd man/thin.Rd man/trajectoryWeightMatrix.Rd man/weightMatrix-set.Rd man/weightedPearson.Rd man/weightedSpearman.Rd man/weightedVariance.Rd man/weightedZIKendall.Rd man/weightedZISpearman.Rd vignettes/scHOT.Rmd

shazanfar/scHOT documentation built on June 29, 2023, 5:29 p.m.