availableRAVmodel: List the available RAVmodels

In shbrief/GenomicSuperSignature: Interpretation of RNA-seq experiments through robust, efficient comparison to public databases

List the available RAVmodels

Description

List the available RAVmodels

Usage

availableRAVmodel(simplify = TRUE)

Arguments

simplify

Default is TRUE. If it is set to FALSE, the additional metadata of different versions of RAVmodel

Value

Under the default, this function will return a data frame with four columns - prior, version, update, pkg_version.

• prior : Different gene sets used for RAVmodel annotation. Currently, two are available - C2 for MSigDB C2 (curated gene sets), and PLIERpriors for bloodCellMarkersIRISDMAP, svmMarkers, and canonicalPathways

• version : RAVmodel's version, which can be an input for version argument of getModel function

• update : Date the RAVmodel is updated

• pkg_version : Compatible version of GenomicSuperSignature

Examples

availableRAVmodel()

shbrief/GenomicSuperSignature documentation built on May 3, 2023, 10:07 p.m.