findStudiesInCluster: Find the studies contributing each RAV

In shbrief/GenomicSuperSignature: Interpretation of RNA-seq experiments through robust, efficient comparison to public databases

Find the studies contributing each RAV

Description

Find the studies contributing each RAV

Usage

findStudiesInCluster(RAVmodel, ind = NULL, studyTitle = FALSE)

Arguments

RAVmodel	PCAGenomicSignatures object.
ind	A numeric vector containing the RAV indexes. Under the default (NULL), studies associated with all the RAV indexes will be returned as a list.
studyTitle	Default is FALSE. This parameter is effective only when the index value is specificed. If it's TRUE, the output will be a data frame with the study

Value

A list of character vectors. Under the default condition (ind = NULL), all the RAVs will be checked for their contributing studies and the length of the list will be same as the number of RAVs (= metadata(x)$k). If you provide the ind argument, studies associated with only the specified RAVs will be returned.

Note

Mainly used for model building, within buildAvgLoading.

Examples

data(miniRAVmodel)
findStudiesInCluster(miniRAVmodel, 1076)

shbrief/GenomicSuperSignature documentation built on May 3, 2023, 10:07 p.m.