getRAVInfo: Extract information on a specific RAV
In shbrief/GenomicSuperSignature: Interpretation of RNA-seq experiments through robust, efficient comparison to public databases
getRAVInfo R Documentation
Extract information on a specific RAV
Description
Extract information on a specific RAV
Usage
getRAVInfo(RAVmodel, ind)
Arguments
RAVmodel
A PCAGenomicSignatures object
ind
An index of RAV
Value
A list with four elements: clusterSize, silhouetteWidth,
enrichedPathways (the number of enriched pathways), and members.
The 'members' is the summary table of PCs in RAV, containing three columns:
studyName, PC, and Variance explained (
Examples
data(miniRAVmodel)
getRAVInfo(miniRAVmodel, ind = 438)
shbrief/GenomicSuperSignature documentation built on May 3, 2023, 10:07 p.m.
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| getRAVInfo | R Documentation |
Extract information on a specific RAV
Description
Extract information on a specific RAV
Usage
getRAVInfo(RAVmodel, ind)
Arguments
RAVmodel |
A PCAGenomicSignatures object |
ind |
An index of RAV |
Value
A list with four elements: clusterSize, silhouetteWidth, enrichedPathways (the number of enriched pathways), and members. The 'members' is the summary table of PCs in RAV, containing three columns: studyName, PC, and Variance explained (
Examples
data(miniRAVmodel)
getRAVInfo(miniRAVmodel, ind = 438)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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