annotateRAV: Search the top enriched pathways for RAV
In shbrief/PCAGenomicSignatures: Interpretation of RNA-seq experiments through robust, efficient comparison to public databases
annotateRAV R Documentation
Search the top enriched pathways for RAV
Description
Search the top enriched pathways for RAV
Usage
annotateRAV(RAVmodel, ind, n = 5, abs = FALSE)
Arguments
RAVmodel
PCAGenomicSignatures object.
ind
An integer for RAV you want to check the enriched pathways.
n
A number of top enriched pathways to output. Default is 5.
abs
Default is FALSE. If it's set to TRUE, the enriched
pathways will be listed based on abs(NES).
Value
A data frame with n rows and 4 columns;
Description, NES, pvalue, and qvalues
Examples
data(miniRAVmodel)
annotateRAV(miniRAVmodel, ind = 695)
shbrief/PCAGenomicSignatures documentation built on May 3, 2023, 11:21 a.m.
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| annotateRAV | R Documentation |
Search the top enriched pathways for RAV
Description
Search the top enriched pathways for RAV
Usage
annotateRAV(RAVmodel, ind, n = 5, abs = FALSE)
Arguments
RAVmodel |
PCAGenomicSignatures object. |
ind |
An integer for RAV you want to check the enriched pathways. |
n |
A number of top enriched pathways to output. Default is 5. |
abs |
Default is |
Value
A data frame with n rows and 4 columns;
Description, NES, pvalue, and qvalues
Examples
data(miniRAVmodel)
annotateRAV(miniRAVmodel, ind = 695)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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