getModel: Download a PCAGenomicSignatures model
In shbrief/PCAGenomicSignatures: Interpretation of RNA-seq experiments through robust, efficient comparison to public databases
getModel R Documentation
Download a PCAGenomicSignatures model
Description
Download a PCAGenomicSignatures model
Usage
getModel(prior = c("C2", "PLIERpriors"), version = "latest", load = TRUE)
Arguments
prior
The name of gene sets used to annotate PCAGenomicSignatures.
Currently there are two available options.
-
C2 : MSigDB C2 (curated gene sets)
-
PLIERpriors : bloodCellMarkersIRISDMAP, svmMarkers, and
canonicalPathways
version
Default is latest. Available versions are listed in
version column of availableRAVmodel() output.
load
Default is TRUE. If it's set to FALSE, the models
are just downloaded to cache but not loaded into memory.
Value
File cache location or PCAGenomicSignatures object loaded from it.
Examples
z = getModel("C2")
shbrief/PCAGenomicSignatures documentation built on May 3, 2023, 11:21 a.m.
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| getModel | R Documentation |
Download a PCAGenomicSignatures model
Description
Download a PCAGenomicSignatures model
Usage
getModel(prior = c("C2", "PLIERpriors"), version = "latest", load = TRUE)
Arguments
prior |
The name of gene sets used to annotate PCAGenomicSignatures. Currently there are two available options.
|
version |
Default is |
load |
Default is |
Value
File cache location or PCAGenomicSignatures object loaded from it.
Examples
z = getModel("C2")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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