miniTCGA: Subset of TCGA-COAD and TCGA-BRCA RNA sequencing datasets
In shbrief/PCAGenomicSignatures: Interpretation of RNA-seq experiments through robust, efficient comparison to public databases
miniTCGA R Documentation
Subset of TCGA-COAD and TCGA-BRCA RNA sequencing datasets
Description
TCGA-COAD and TCGA-BRCA RNA sequencing data were acquired using
GSEABenchmarkeR::loadEData and log-transformed. Conversion from
EntrezID to gene symbol was done with EnrichmentBrowser::idMap. Only
8 samples from each dataset are kept.
Usage
miniTCGA
Format
A list containing two SummarizedExperiment objects.
Author(s)
Sehyun Oh shbrief@gmail.com
shbrief/PCAGenomicSignatures documentation built on July 4, 2025, 8:26 p.m.
R Package Documentation
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| miniTCGA | R Documentation |
Subset of TCGA-COAD and TCGA-BRCA RNA sequencing datasets
Description
TCGA-COAD and TCGA-BRCA RNA sequencing data were acquired using
GSEABenchmarkeR::loadEData and log-transformed. Conversion from
EntrezID to gene symbol was done with EnrichmentBrowser::idMap. Only
8 samples from each dataset are kept.
Usage
miniTCGA
Format
A list containing two SummarizedExperiment objects.
Author(s)
Sehyun Oh shbrief@gmail.com
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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