AnVIL workspace

currentInput

R Documentation

Check the current input arguments

Description

Check the current input arguments

Usage

currentInput(workspaceName, config, requiredInputOnly = TRUE, analysis = NULL)

Arguments

`workspaceName`	Name of the workspace
`config`	Workflow configuration. Output from the `getWorkflowConfig` function.
`requiredInputOnly`	Under the default (`TRUE`), only the required inputs are returned.
`analysis`	If specified, only the minimally required inputs for a given workflow will be returned.

Value

A data.frame for the inputs defined in a workflow configuration.

Examples

library(AnVILBase)
if (
    gcloud_exists() && identical(avplatform_namespace(), "AnVILGCP") &&
    nzchar(avworkspace_name())
) {
workspaceName <- "Bioconductor-Workflow-DESeq2"
config <- getWorkflowConfig(workspaceName)
currentInput(workspaceName = workspaceName, config = config)
}

shbrief/RunTerraWorkflow documentation built on Oct. 31, 2024, 1:22 p.m.