dot-biobakery_currentInput: Check the current input arguments

In shbrief/RunTerraWorkflow: Run workflows implemented in Terra/AnVIL workspace

Check the current input arguments

Description

Check the current input arguments

Usage

.biobakery_currentInput(config)

Arguments

config

Workflow configuration. Output from the getWorkflowConfig function.

Value

A list length of two, including inputListPath and inputFilePath.

Examples

library(AnVILBase)
if (
    gcloud_exists() && identical(avplatform_namespace(), "AnVILGCP") &&
    nzchar(avworkspace_name())
) {
config <- avworkflow_configuration_get(
workflow_namespace = "mtx_workflow_biobakery_version3", 
workflow_name = "mtx_workflow_biobakery_version3", 
workspace_namespace = "waldronlab-terra-rstudio", 
workspace_name = "mtx_workflow_biobakery_version3_template")
biobakery_inputs <- .biobakery_currentInput(config)
}

shbrief/RunTerraWorkflow documentation built on Oct. 31, 2024, 1:22 p.m.