getWorkflowConfig: Check the workflow configuration

In shbrief/RunTerraWorkflow: Run workflows implemented in Terra/AnVIL workspace

Check the workflow configuration

Description

Check the workflow configuration

Usage

getWorkflowConfig(workspaceName, workflowName = NULL)

Arguments

workspaceName	Name of the workspace
workflowName	Name of the workflow to run. If a single workflow is available under the specified workspace, this function will check the input of that workflow under the default (NULL). If there are multiple workflows available, you should specify the workflow.

Value

A data.frame for the inputs defined in a workflow configuration.

Examples

library(AnVILBase)
if (
    gcloud_exists() && identical(avplatform_namespace(), "AnVILGCP") &&
    nzchar(avworkspace_name())
) {
config <- getWorkflowConfig(workspaceName = "Bioconductor-Workflow-DESeq2")
config
}

shbrief/RunTerraWorkflow documentation built on Oct. 31, 2024, 1:22 p.m.