generateAmplificationTable: Fast calculation of expected multiple strand displacement...

In sherrillmix/ampCountR: Predict Amplification Products of Multiple Strand Displacement Amplification

Description

Uses dynamic programing to build a matrix of the expected amplifications for positions with a given a number of forward primers upstream and reverse primers downstream and within range of the polymerase.

Usage

generateAmplificationTable(nForwards = 10, nReverses = 10)

Arguments

nForwards	Calculate a matrix from zero to this many forward primers
nReverses	Calculate a matrix from zero to this many reverse primers

Value

A nForwards+1 row, nReverses+1 column matrix of the expected amplifications for each combination of numbers of forward and reverse primers. Row 1 is for 0 forward primers within range, row 2 is for 1 forward primer, column 1 is for 0 reverse primers, column 2 is for 1 reverse primers ...

See Also

enumerateAmplifications

Examples

generateAmplificationTable(20,20)

sherrillmix/ampCountR documentation built on May 29, 2019, 9:24 p.m.