RetriveMetaDataFromPubmedEfetch: RetriveMetaDataFromPubmedEfetch

In shihikoo/pubmedTools: Tools for retriving information from PubMed database

Description

RetriveMetaDataFromPubmedEfetch

Usage

RetriveMetaDataFromPubmedEfetch(doc, columns = "")

Arguments

doc	an XMLInternalDocument class file read from a pubmed efetch xml file
columns	a list of string of requested column names: "pmid","pmcid", "journal", "journalCountry","publicationYear","funders","authors","affiliations","title","abstract","isbn","volume","issue","pages", "keywords","doi"

Value

a list of metaDatarmation retrived from PubMed

Examples

doc <- GetDoc(id = c("28852052", "29041955","31230181"), db = "pubmed", endpoint = "efetch")
RetriveMetaDataFromPubmedEfetch(doc, columns = c("pmid","pmcid","title","doi"))

doc <- GetDoc(id = c("31524133"), db = "pubmed", endpoint = "efetch")
RetriveMetaDataFromPubmedEfetch(doc, columns = c("pmid","pmcid","title","doi"))

doc <- GetDoc(id = c("20704052"), db = "pubmed", endpoint = "efetch")
RetriveMetaDataFromPubmedEfetch(doc, columns = c("pmid","pmcid","title","doi"))

shihikoo/pubmedTools documentation built on June 19, 2021, 9:56 a.m.