README.md
In shimlab/riboHMM2: Analysis tool for Ribo-seq
Introduction
riboHMM2 is an R package designed to find the locations of upstream Open Reading Frames (uORFs) and the main coding region in RNA.
Given the ribo-seq counts, one can use riboHMM2 to estimate the parameters in the assumed hidden Markov model, and further to predict the the locations of uORFs and the main coding region in RNA.
Installation
Start R and run:
library(devtools)
install_github("shimlab/riboHMM2")
shimlab/riboHMM2 documentation built on May 19, 2019, 6:23 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Introduction
riboHMM2 is an R package designed to find the locations of upstream Open Reading Frames (uORFs) and the main coding region in RNA.
Given the ribo-seq counts, one can use riboHMM2 to estimate the parameters in the assumed hidden Markov model, and further to predict the the locations of uORFs and the main coding region in RNA.
Installation
Start R and run:
library(devtools)
install_github("shimlab/riboHMM2")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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