transprob: transprob
In shimlab/riboHMM2: Analysis tool for Ribo-seq

transprob creats the transition matrix for the hidden markov chain.

1	transprob(trans, stp, stp2)

`trans`	c(rho_u, rho, delta)
`stp`	1 if next codon is stop codon
`stp2`	In `generate_uORF`, stp = theta_u, stp2 = theta

The transition matrix A

trans <- c(0.1, 0.2, 0.3)
stp <- 0.4; stp2 <- 0.45
A <- transprob(trans, stp, stp2)
colnames(A) <- seq(1,21)
View(A)

shimlab/riboHMM2 documentation built on May 19, 2019, 6:23 p.m.

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