Man pages for shkonishi/rskoseq
This is my personal package of R functions for NGS data

degallDifferential Expression analysis using all combination
fqfilterFiltering and trimming of fastq files using ShortRead package
gc_readGC content per read
genome_summarySummary of genomic sequences from fasta file
ggblastSimple visualization of local blast search output
gg_qaQuality assesment with ShortRead package and return ggplot...
kmer_cntCounting kmer of nucleotide sequence
maplotMA-plot
maprateParse hisat2 log file
nxCalcuration of N50 and L50 from genome sequence.
project_rnsqCreate directory for RNA-seq pipeline
rawfqextrawfqext
rblastExecution of local blast search usign system command and...
rep_hisat2Replicate execution of read alignment using hisat2
rep_rsemContinuous execution of sequence alignment using RSEM
rep_stringtieConsecutive execution of Transcript assembly and...
tmm_normNormarization of RNA-seq count data using tmm
shkonishi/rskoseq documentation built on Dec. 6, 2018, 6:18 p.m.