Man pages for shkonishi/rskoseq
This is my personal package of R functions for NGS data

degDifferential Expression Gene extraction using TCC package
fetch_bmtFetch data sets from biomart data base
fqfilterFiltering and trimming of fastq files using ShortRead package
gc_readGC content per read
genome_summarySummary of genomic sequences from fasta file
ggblastSimple visualization of local blast search output
gg_qaQuality assesment with ShortRead package and return ggplot...
kmer_strmCounting kmer of nucleotide sequence
maprateParse hisat2 or bowtie2 log file
nxCalcuration of NX and LX from genome sequence.
project_rnsqCreate directory for RNA-seq pipeline
rawfqextrawfqext
rblastLocal blast search with outfmt 6
rep_hisat2Replicate execution of read alignment using hisat2
rep_rsemContinuous execution of sequence alignment using RSEM
rep_stringtieConsecutive execution of Transcript assembly and...
revcompReverse and/or Complement of Nucleotide sequence as character...
tcc_normNormarization of RNA-seq count data using tmm
vcf_utlsThe utility for handling VCF
shkonishi/rskoseq documentation built on April 18, 2021, 3:50 p.m.