deg | Differential Expression Gene extraction using TCC package |
fetch_bmt | Fetch data sets from biomart data base |
fqfilter | Filtering and trimming of fastq files using ShortRead package |
gc_read | GC content per read |
genome_summary | Summary of genomic sequences from fasta file |
ggblast | Simple visualization of local blast search output |
gg_qa | Quality assesment with ShortRead package and return ggplot... |
kmer_strm | Counting kmer of nucleotide sequence |
maprate | Parse hisat2 or bowtie2 log file |
nx | Calcuration of NX and LX from genome sequence. |
project_rnsq | Create directory for RNA-seq pipeline |
rawfqext | rawfqext |
rblast | Local blast search with outfmt 6 |
rep_hisat2 | Replicate execution of read alignment using hisat2 |
rep_rsem | Continuous execution of sequence alignment using RSEM |
rep_stringtie | Consecutive execution of Transcript assembly and... |
revcomp | Reverse and/or Complement of Nucleotide sequence as character... |
tcc_norm | Normarization of RNA-seq count data using tmm |
vcf_utls | The utility for handling VCF |
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