rawfqext: rawfqext

Description Usage Arguments Examples

View source: R/rawfqext.R

Description

Merging fastq files of NEXTSEQ output, lane splitted, created by BaseSpace

Usage

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rawfqext(rawfq_dir, paired, prefix)

Arguments

rawfq_dir

fastq containing directory

paired

logical, if TRUE is paired end read.

prefix

Characters of sample name, The default value is NULL, collect from directories name.

Examples

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## Not run: 
rawfq_dir <- "~/pub/sampledata/fastq/NEXTSEQ"
file.remove(list.files(rawfq_dir, "*.gz", full.names = T))
prefix <- c("3AD","3AE")
rawfqext(rawfq_dir, prefix)

## End(Not run)

shkonishi/rskoseq documentation built on April 18, 2021, 3:50 p.m.