Description Usage Arguments Examples
The result of blast output using rsko::rblast is dataframe, or local blast output dat with outfmt '6'. The data has these columns, at least, "qseqid", "sseqid", "pident", "qstart", "qend", "sstart", "send", "qlen", "slen","sstrand".
1 | ggblast(blast_out, drawtype)
|
blast_out |
dataframe: result of rskoseq::rblast output |
drawtype |
character number: 1: facet_wrap with query id, 2: A panel per query, 3: All in one panel |
1 2 3 4 5 6 7 8 9 10 | ## Not run:
## sample fasta of Biostrings package
fp <- system.file("extdata", "AtMlos.fna", package="rskodat")
bndb <- "~/db/cdna/TAIR10_cdna" # set you environment
bnout <- rskoseq::rblast(fp, "-", "blastn", bndb, "-num_threads 4")
res1 <- ggblast(bnout, 1)
res2 <- ggblast(bnout, 2)
res3 <- ggblast(bnout, 3)
## End(Not run)
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