Man pages for shlienlab/ShlienLab.Core.Filter
ShlienLab.Core.Filter
| add.flagged.count.column | Count number of "FLAGGED" in a vector. |
| add.snvid | Add a SNVID column. |
| cigar_to_data_frame | cigar_to_data_frame |
| count_rda_clips | count_rda_clips |
| create_panel_of_normal_count_table | Create a panel of normal count table. |
| create.panel.of.normal.dataframe | Create the panel of normals (PON) dataframe. |
| flag.complex.overlap.loci | Flag overlap of loci to complex regions of the genome. |
| get_cigar_mutations | get_cigar_mutation |
| get_cigar_type | get_cigar_type |
| get_position_reads | get_position_reads |
| get.recurrent.snvids | Get recurrent SNV IDs from dataframe. |
| get_which | get_which |
| load_bam_reads | load_bam_reads |
| md_snv_position | md_snv_position |
| run_snv_filter_postprocessing | Run the SNV filter postprocessing function. |
