create_panel_of_normal_count_table: Create a panel of normal count table.

Description Usage Arguments Value Author(s)

Description

A function that imports a list of mutations in normal samples and aggregates into a single table of normal counts based on SNV ID.

Usage

1
create_panel_of_normal_count_table(path = NULL, recurrence = 2, pattern = "annotated_filtered.rda$")

Arguments

path

Full path to the directory containing panel of normal R dataframes

recurrence

a recurrent threshold for reporting (optional, default: 2)

pattern

file pattern (optional, default: annotated_filtered.rda$)

Value

Returns a dataframe containing panel of normal SNV IDs and counts.

Author(s)

Richard J. de Borja <richard.deborja@sickkids.ca>


shlienlab/ShlienLab.Core.Filter documentation built on May 20, 2019, 5:27 p.m.