create_panel_of_normal_count_table: Create a panel of normal count table.

In shlienlab/ShlienLab.Core.Filter: ShlienLab.Core.Filter

Description

A function that imports a list of mutations in normal samples and aggregates into a single table of normal counts based on SNV ID.

Usage

create_panel_of_normal_count_table(path = NULL, recurrence = 2, pattern = "annotated_filtered.rda$")

Arguments

path	Full path to the directory containing panel of normal R dataframes
recurrence	a recurrent threshold for reporting (optional, default: 2)
pattern	file pattern (optional, default: annotated_filtered.rda$)

Value

Returns a dataframe containing panel of normal SNV IDs and counts.

Author(s)

Richard J. de Borja <[e-mail]>

shlienlab/ShlienLab.Core.Filter documentation built on May 20, 2019, 5:27 p.m.