add.snvid: Add a SNVID column.

In shlienlab/ShlienLab.Core.Filter: ShlienLab.Core.Filter

Description

A method for adding the SNVID to the mutation dataframe using chromosome, start, end, ref, alt.

Usage

add.snvid(data = NULL)

Arguments

data	A dataframe from the standard Shlien Lab SNV pipeline.

Value

Returns a dataframe containing appended SNV ID.

Author(s)

Richard J. de Borja <[e-mail]>

Examples

x = data.frame(annovar_chr=c(1, 2, 3), annovar_start=c(1000, 2000, 3000), annovar_end=c(1000, 2000, 3000), annovar_ref=c('A', 'G', 'C'), annovar_alt=c('C', 'C', 'T'))
add.snvid(data=x)

shlienlab/ShlienLab.Core.Filter documentation built on May 20, 2019, 5:27 p.m.