Man pages for shlienlab/ShlienLab.Core.Filter
ShlienLab.Core.Filter

add.flagged.count.columnCount number of "FLAGGED" in a vector.
add.snvidAdd a SNVID column.
cigar_to_data_framecigar_to_data_frame
count_rda_clipscount_rda_clips
create_panel_of_normal_count_tableCreate a panel of normal count table.
create.panel.of.normal.dataframeCreate the panel of normals (PON) dataframe.
flag.complex.overlap.lociFlag overlap of loci to complex regions of the genome.
get_cigar_mutationsget_cigar_mutation
get_cigar_typeget_cigar_type
get_position_readsget_position_reads
get.recurrent.snvidsGet recurrent SNV IDs from dataframe.
get_whichget_which
load_bam_readsload_bam_reads
md_snv_positionmd_snv_position
run_snv_filter_postprocessingRun the SNV filter postprocessing function.
shlienlab/ShlienLab.Core.Filter documentation built on May 19, 2017, 5:03 a.m.