annotate.mutect2.data: Annotate MuTect2 data.
In shlienlab/ShlienLab.Core.SSM: Simple Somatic Mutation (SSM) library.
Description
Usage
Arguments
Value
Author(s)
View source: R/annotate.mutect2.data.R
Description
After running MuTect2 on a per chromosome basis and annotating with ANNOVAR, this program adds additional annotation data for downstream analysis.
Usage
1
Arguments
data
MuTect and ANNOVAR processed variant dataframe [required]
Value
Returns the indel dataframe with appended columns including: hgnc_gene, ensembl_gene, cosmic_census and aa (amino acid).
Author(s)
Richard J. de Borja <richard.deborja@sickkids.ca>
shlienlab/ShlienLab.Core.SSM documentation built on May 20, 2019, 5:27 p.m.
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Description Usage Arguments Value Author(s)
View source: R/annotate.mutect2.data.R
Description
After running MuTect2 on a per chromosome basis and annotating with ANNOVAR, this program adds additional annotation data for downstream analysis.
Usage
1 |
Arguments
data |
MuTect and ANNOVAR processed variant dataframe [required] |
Value
Returns the indel dataframe with appended columns including: hgnc_gene, ensembl_gene, cosmic_census and aa (amino acid).
Author(s)
Richard J. de Borja <richard.deborja@sickkids.ca>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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