API for shokoohi/DMCHMM
Differentially Methylated CpG using Hidden Markov Model

Global functions
BSDMCs Man page
BSDMCs-class Man page
BSData Man page
BSData-class Man page
DMCHMM Man page
DMCHMM-package Man page
EMHMM.M Source code
HMMmcmc.M Source code
cBSDMCs Man page Source code
cBSDMCs,matrix,matrix,matrix,matrix,GRanges-method Man page
cBSDMCs-method Man page Man page
cBSData Man page Source code
cBSData,matrix,matrix,GRanges-method Man page
cBSData-method Man page Man page
combine Man page Man page
combine,BSDMCs,BSDMCs-method Man page
combine,BSData,BSData-method Man page
combine-method Man page Man page Man page
combine.BSDMCs Source code
combine.BSData Source code
data Man page
findDMCs Man page Source code
findDMCs,BSDMCs-method Man page
findDMCs-method Man page Man page
manhattanDMCs Man page Source code
manhattanDMCs,BSDMCs-method Man page
manhattanDMCs-method Man page Man page
marglike Source code
marglike.M Source code
methHMEM Man page Source code
methHMEM,BSData-method Man page
methHMEM-method Man page Man page
methHMMCMC Man page Source code
methHMMCMC,BSDMCs-method Man page
methHMMCMC-method Man page Man page
methLevels Man page Source code
methLevels,BSDMCs-method Man page
methLevels-method Man page Man page Man page Man page
methLevels<- Man page
methLevels<-,BSDMCs,matrix-method Man page
methReads Man page Man page Source code
methReads,BSDMCs-method Man page
methReads,BSData-method Man page
methReads-method Man page Man page Man page Man page Man page Man page Man page Man page
methReads<- Man page Man page
methReads<-,BSDMCs,matrix-method Man page
methReads<-,BSData,matrix-method Man page
methStates Man page Source code
methStates,BSDMCs-method Man page
methStates-method Man page Man page Man page Man page
methStates<- Man page
methStates<-,BSDMCs,matrix-method Man page
onAttach Source code
params Man page
qqDMCs Man page Source code
qqDMCs,BSDMCs-method Man page
qqDMCs-method Man page Man page
readBismark Man page Man page Man page Source code
readBismark,character,DataFrame-method Man page
readBismark,character,character-method Man page
readBismark,character,data.frame-method Man page
readBismark-method Man page Man page Man page Man page
replace.methLevels Source code
replace.methReads Source code
replace.methStates Source code
replace.totalReads Source code
runEM.M Source code
runMCMC.M Source code
totalReads Man page Man page Source code
totalReads,BSDMCs-method Man page
totalReads,BSData-method Man page
totalReads-method Man page Man page Man page Man page Man page Man page Man page Man page
totalReads<- Man page Man page
totalReads<-,BSDMCs,matrix-method Man page
totalReads<-,BSData,matrix-method Man page
writeBED Man page Man page Man page Man page Man page Man page Man page Man page
writeBED,BSDMCs,character,character-method Man page
writeBED,BSDMCs,character,missing-method Man page
writeBED,BSDMCs,missing,character-method Man page
writeBED,BSDMCs,missing,missing-method Man page
writeBED,BSData,character,character-method Man page
writeBED,BSData,character,missing-method Man page
writeBED,BSData,missing,character-method Man page
writeBED,BSData,missing,missing-method Man page
writeBED-method Man page Man page Man page Man page Man page Man page Man page Man page Man page
writeBED_BSDMCs Source code
writeBED_BSData Source code
shokoohi/DMCHMM documentation built on Sept. 1, 2017, 12:52 p.m.