API for shokoohi/DMCHMM
Differentially Methylated CpG using Hidden Markov Model

Global functions
BSDMCs Man page
BSDMCs-class Man page
BSData Man page
BSData-class Man page
DMCHMM Man page
DMCHMM-package Man page
EMHMM.M Source code
HMMmcmc.M Source code
cBSDMCs Man page Source code
cBSDMCs,matrix,matrix,matrix,matrix,matrix,GRanges-method Man page
cBSDMCs-method Man page
cBSData Man page Source code
cBSData,matrix,matrix,GRanges-method Man page
cBSData-method Man page
combine Man page
combine,BSDMCs,BSDMCs-method Man page
combine,BSData,BSData-method Man page
combine-method Man page
combine.BSDMCs Source code
combine.BSData Source code
data Man page
findDMCs Man page Source code
findDMCs,BSDMCs-method Man page
findDMCs-method Man page
manhattanDMCs Man page Source code
manhattanDMCs,BSDMCs-method Man page
manhattanDMCs-method Man page
marglike Source code
marglike.M Source code
methHMEM Man page Source code
methHMEM,BSData-method Man page
methHMEM-method Man page
methHMMCMC Man page Source code
methHMMCMC,BSDMCs-method Man page
methHMMCMC-method Man page
methLevels Man page Source code
methLevels,BSDMCs-method Man page
methLevels-method Man page
methLevels<- Man page
methLevels<-,BSDMCs,matrix-method Man page
methReads Man page Source code
methReads,BSDMCs-method Man page
methReads,BSData-method Man page
methReads-method Man page
methReads<- Man page
methReads<-,BSDMCs,matrix-method Man page
methReads<-,BSData,matrix-method Man page
methStates Man page Source code
methStates,BSDMCs-method Man page
methStates-method Man page
methStates<- Man page
methStates<-,BSDMCs,matrix-method Man page
onAttach Source code
params Man page
qqDMCs Man page Source code
qqDMCs,BSDMCs-method Man page
qqDMCs-method Man page
readBismark Man page Source code
readBismark,character,DataFrame-method Man page
readBismark,character,character-method Man page
readBismark,character,data.frame-method Man page
readBismark-method Man page
replace.methLevels Source code
replace.methReads Source code
replace.methStates Source code
replace.totalReads Source code
runEM.M Source code
runMCMC.M Source code
totalReads Man page Source code
totalReads,BSDMCs-method Man page
totalReads,BSData-method Man page
totalReads-method Man page
totalReads<- Man page
totalReads<-,BSDMCs,matrix-method Man page
totalReads<-,BSData,matrix-method Man page
writeBED Man page
writeBED,BSDMCs,character,character-method Man page
writeBED,BSDMCs,character,missing-method Man page
writeBED,BSDMCs,missing,character-method Man page
writeBED,BSDMCs,missing,missing-method Man page
writeBED,BSData,character,character-method Man page
writeBED,BSData,character,missing-method Man page
writeBED,BSData,missing,character-method Man page
writeBED,BSData,missing,missing-method Man page
writeBED-method Man page
writeBED_BSDMCs Source code
writeBED_BSData Source code
shokoohi/DMCHMM documentation built on Sept. 6, 2018, 1:55 p.m.