DMCHMM-package: Differentially Methylated CpG using Hidden Markov Model

Description DMCHMM methods DMCHMM objects

Description

DMCHMM is a novel profiling tool for identifying differentially methylated CpG sites using Hidden Markov Model in bisulfite sequencing data.

DMCHMM methods

cBSData, cBSDMCs, methHMEM, methHMMCMC, findDMCs, qqDMCs, manhattanDMCs, readBismark, writeBED.

DMCHMM objects

BSData-class, BSDMCs-class


shokoohi/DMCHMM documentation built on Sept. 1, 2017, 12:52 p.m.