Files in shokoohi/DMCHMM

Differentially Methylated CpG using Hidden Markov Model

R/AllClasses.R R/AllGenerics.R R/DMCHMM-package.R R/cBSDMCs-method.R R/cBSData-method.R R/combine-method.R R/data.R R/findDMCs-method.R R/manhattanDMCs-method.R R/methHMEM-method.R R/methHMMCMC-method.R R/methLevels-method.R R/methReads-method.R R/methStates-method.R R/methVars-method.R R/qqDMCs-method.R R/readBismark-method.R R/totalReads-method.R R/writeBED-method.R R/zzz.R inst/NEWS.md man/BSDMCs-class.Rd man/BSData-class.Rd man/DMCHMM-package.Rd man/cBSDMCs-method.Rd man/cBSData-method.Rd man/combine-method.Rd man/data.Rd man/findDMCs-method.Rd man/manhattanDMCs-method.Rd man/methHMEM-method.Rd man/methHMMCMC-method.Rd man/methLevels-method.Rd man/methReads-method.Rd man/methStates-method.Rd man/methVars-method.Rd man/params.Rd man/qqDMCs-method.Rd man/readBismark-method.Rd man/totalReads-method.Rd man/writeBED-method.Rd tests/testthat.R tests/testthat/test-methHMEM.R vignettes/DMCHMM.R vignettes/DMCHMM.Rmd