getTransitionsQuery: Get transitions from a SQLite file

View source: R/get_osw_query.R

getTransitionsQueryR Documentation

Get transitions from a SQLite file

Description

Query is generated to identify features and their transitions below a FDR cut-off from a run. Order of transition intensity is kept same as the order of their Ids in getPrecursorsQuery.

Usage

getTransitionsQuery(runType = "DIA_Proteomics")

Arguments

runType

(char) This must be one of the strings "DIA_proteomics", "DIA_IPF", "DIA_Metabolomics".

Value

SQL query to be searched.

Author(s)

Shubham Gupta, shubh.gupta@mail.utoronto.ca

ORCID: 0000-0003-3500-8152

License: (c) Author (2020) + GPL-3 Date: 2020-11-15

See Also

fetchTransitionsFromRun, getPrecursorsQueryID, getPrecursorsQuery


shubham1637/DIAlign documentation built on March 27, 2023, 7:12 a.m.