getTransitionsQuery: Get transitions from a SQLite file
In shubham1637/DIAlign: Dynamic Programming Based Alignment of MS2 Chromatograms
View source: R/get_osw_query.R
getTransitionsQuery R Documentation
Get transitions from a SQLite file
Description
Query is generated to identify features and their transitions below a FDR cut-off from a run.
Order of transition intensity is kept same as the order of their Ids in getPrecursorsQuery.
Usage
getTransitionsQuery(runType = "DIA_Proteomics")
Arguments
runType
(char) This must be one of the strings "DIA_proteomics", "DIA_IPF", "DIA_Metabolomics".
Value
SQL query to be searched.
Author(s)
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2020) + GPL-3
Date: 2020-11-15
See Also
fetchTransitionsFromRun, getPrecursorsQueryID, getPrecursorsQuery
shubham1637/DIAlign documentation built on March 27, 2023, 7:12 a.m.
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View source: R/get_osw_query.R
| getTransitionsQuery | R Documentation |
Get transitions from a SQLite file
Description
Query is generated to identify features and their transitions below a FDR cut-off from a run.
Order of transition intensity is kept same as the order of their Ids in getPrecursorsQuery.
Usage
getTransitionsQuery(runType = "DIA_Proteomics")
Arguments
runType |
(char) This must be one of the strings "DIA_proteomics", "DIA_IPF", "DIA_Metabolomics". |
Value
SQL query to be searched.
Author(s)
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2020) + GPL-3 Date: 2020-11-15
See Also
fetchTransitionsFromRun, getPrecursorsQueryID, getPrecursorsQuery
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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