getAtlasRangeFp: query Footprint data from mongodb atlas

Description Usage Arguments Examples

Description

query Footprint data from mongodb atlas

Usage

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getAtlasRangeFp(mychr, mystart, myend, url, mycoll, mydb)

Arguments

mychr

chromosome

mystart

start position

myend

end position

url

character string with connection url to MongoDB Atlas cluster

mycoll

collection name in mongodb

mydb

database name in mongodb

Examples

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## Not run: 
mychrGo="chr17"
mystartGo=41196312-500*1000
myendGo=41322262+500*1000
mycollGo="fSkin_fibro_bicep_R_DS19745_hg19_FP"
mydbGo="txregnet"
url="mongodb+srv://test:test123!@cluster1-ag7nd.mongodb.net/test"
res_fp=getAtlasRangeFp(mychrGo,mystartGo,myendGo,mycollGo,mydbGo)
res_fp

## End(Not run)

shwetagopaul92/TxRegQuery documentation built on May 29, 2019, 12:42 p.m.