getMongoRangeEqtl: query eQTL from mongodb

Description Usage Arguments Examples

Description

query eQTL from mongodb

Usage

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getMongoRangeEqtl(mychr, mystart, myend, mycoll, mydb)

Arguments

mychr

chromosome

mystart

start position

myend

end position

mycoll

collection name in mongodb

mydb

database name in mongodb

Examples

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## Not run: 
require(GenomicRanges)
require(mongolite)
mychrGo=17
mystartGo=41196312-500*1000
myendGo=41322262+500*1000
mycollGo = "Cells_Transformed_fibroblasts_Analysis_v6p_all_snpgene_pairs_eQTL"
mydbGo="txregnet"
res_eqtl=getMongoRangeEqtl(mychrGo,mystartGo,myendGo,mycollGo,mydbGo)
res_eqtl

## End(Not run)

shwetagopaul92/TxRegQuery documentation built on May 29, 2019, 12:42 p.m.