getAtlasRangeEqtl: query eQTL from mongodb atlas

In shwetagopaul92/txregquery: Query txregnet data

Description

query eQTL from mongodb atlas

Usage

getAtlasRangeEqtl(mychr, mystart, myend, mycoll, mydb, url)

Arguments

mychr	chromosome
mystart	start position
myend	end position
mycoll	collection name in mongodb
mydb	database name in mongodb
url	character string with connection url to MongoDB Atlas cluster

Examples

## Not run: 
require(GenomicRanges)
require(mongolite)
mychrGo=17
mystartGo=41196312-500*1000
myendGo=41322262+500*1000
mycollGo = "Whole_Blood_allpairs_v7_eQTL"
mydbGo="txregnet"
url="mongodb+srv://test:test123!@cluster1-ag7nd.mongodb.net/test"
res_eqtl=getAtlasRangeEqtl(mychrGo,mystartGo,myendGo,mycollGo,mydbGo)
res_eqtl

## End(Not run)

shwetagopaul92/txregquery documentation built on May 14, 2019, 7:43 a.m.