Description Usage Arguments Examples
query Footprint data from mongodb atlas
1 | getAtlasRangeFp(mychr, mystart, myend, url, mycoll, mydb)
|
mychr |
chromosome |
mystart |
start position |
myend |
end position |
url |
character string with connection url to MongoDB Atlas cluster |
mycoll |
collection name in mongodb |
mydb |
database name in mongodb |
1 2 3 4 5 6 7 8 9 10 11 | ## Not run:
mychrGo="chr17"
mystartGo=41196312-500*1000
myendGo=41322262+500*1000
mycollGo="fSkin_fibro_bicep_R_DS19745_hg19_FP"
mydbGo="txregnet"
url="mongodb+srv://test:test123!@cluster1-ag7nd.mongodb.net/test"
res_fp=getAtlasRangeFp(mychrGo,mystartGo,myendGo,mycollGo,mydbGo)
res_fp
## End(Not run)
|
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