Description Usage Arguments Examples
query eQTL from mongodb
1 | getMongoRangeEqtl(mychr, mystart, myend, mycoll, mydb)
|
mychr |
chromosome |
mystart |
start position |
myend |
end position |
mycoll |
collection name in mongodb |
mydb |
database name in mongodb |
1 2 3 4 5 6 7 8 9 10 11 12 | ## Not run:
require(GenomicRanges)
require(mongolite)
mychrGo=17
mystartGo=41196312-500*1000
myendGo=41322262+500*1000
mycollGo = "Cells_Transformed_fibroblasts_Analysis_v6p_all_snpgene_pairs_eQTL"
mydbGo="txregnet"
res_eqtl=getMongoRangeEqtl(mychrGo,mystartGo,myendGo,mycollGo,mydbGo)
res_eqtl
## End(Not run)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.