NBregDE2: Bayesian Negative Binomial regression for differential...

Description Usage Arguments

View source: R/NBregDE2.R

Description

Bayesian Negative Binomial regression for differential expression analysis of sequencing count data with confounding factors

Usage

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NBregDE2(counts, X, cond, idx.cond, Burnin = 1000L, Collections = 1000L,
  PGTruncation = 60L, randtry = 2017)

Arguments

counts

a matrix of counts, rows are corresponding to genes and columns are corresponding to samples.

X

design matrix

cond

the index of covariate corresponding to the main treatment

idx.cond

a vector of covariate indices that the effect of their combination on gene expression is under study

Burnin

Number of burn-in iterations in MCMC

Collections

Number of collected posterior samples after burn-in

PGTruncation

the truncation level used for genrating random numbers from Polya-Gamma distribution

randtry

to be used for set.seed()


siamakz/BNBR documentation built on Oct. 21, 2019, 5:50 a.m.