ncdf2trapdata: Post-processing: Extract model output at trap locations for...
In sidjai/biosplit: Model for continental seasonal migration of insects

Description Usage Arguments Details Value

Extracts the model output by location and outputs the time series for the entire year for that location

1 2	ncdf2trapdata(dirSim, pathTrap, pathHap = NULL, useCombined = TRUE, shUseSum = FALSE, shWrite = TRUE, shAvgSimforHap = FALSE, notes = "")

`dirSim`	The simulation output folder
`pathTrap`	The path to the trap location csv file with the lat/lon of all trap locations or the combined records list with all the data
`pathHap`	The path to the haplotype data in a nice csv output of scrubHap
`useCombined`	Should the program use the combined Final.nc file or the nc slices in the nc folder to use do the snap shot calculation
`shUseSum`	Go through the individual slices and sum up for the week instead of using the combined file
`shWrite`	Should the function write the horizontal and vertical csv files or just return the horizontal matrix
`shAvgSimforHap`	Should the program add an extra column with the average mixing ratio for those dates where the haplotype record is spread out over more than one week?
`notes`	A vector or string of any notes that should be included in the appendix

For the summation analysis type, sometimes there may be less than 7 files in the ncs folder due to model conditions (cfg$outEveryDayStart) so output whether the week has all the files as a logical 52 week vector along with a combined nc file which is used like the regular ncfile throughout. outputs the summation of less than 7 files anyway.

shWrite = 1: only writes the csv file shWrite = 0: A matrix of the horizontal time series with the identifying information in front

sidjai/biosplit documentation built on May 29, 2019, 9:59 p.m.