Man pages for simecek/HPQTL
HPQTL
| add.qtl | Add a QTL to Simulated Phenotype |
| check.genotype.probs | Check 'genotype.probs' object |
| extract.geno | Import qtl / DOQTL cross |
| gensim.matrix | Genetic Similarity Matrix |
| half.inv | Half-inverse matrix operation |
| heritability | Estimate Heritability |
| HPQTL | HPQTL |
| mvnpermute | Permuted Y for (QTLRel) Calculation of Permutation Threshold |
| normalize.matrix | Normalize Matrix |
| rankZ | RankZ Normalization transform |
| scan1 | Genome Scan With a Single QTL Model |
| scan1.threshold | Significance Threshold of Genome Scan |
| sim.cross.geno | Generate a Genotype of Random Cross |
| sim.cross.pheno | Generate Random Phenotype with Given Heritability |
| to.additive | Convert 3 calls to 2 (additive) representation |
| variance.decomposition | Decompose variance into genetic part and a random noise |
