extract.geno: Import qtl / DOQTL cross

In simecek/HPQTL: HPQTL

Description

Import qtl / DOQTL cross

Usage

extract.geno(cross, check.output = TRUE)

Arguments

cross	"cross" object or DO qtl
check.output	check consistency of results

Details

Extract genotype prob. array from "qtl::cross" object.

Value

genotype.probs object is a list of three components

• probs 3-dimensional array of genotype probabilities (subjects x calls x markers) or a list of such arrays

• calls possible genotype calls

• markers

geno object

Examples

data(fake.f2, package="qtl")
fake.f2 <- calc.genoprob(fake.f2)
geno <- extract.geno(fake.f2)

simecek/HPQTL documentation built on May 29, 2019, 10 p.m.