Description Usage Arguments Value Examples
Genetic Similarity Matrix
1 2 | gensim.matrix(geno, procedure = c("LMM", "LOCO", "POMOLOCO", "LM"),
gensim.normalization = "sample-variance", verbose = FALSE)
|
geno |
genotype probabilities (" |
procedure |
procedure of scan1 the G is calculated for |
gensim.normalization |
method to be used for genetic similarity matrix normalization |
subjects |
subseting of subjects |
markers |
subseting of markers |
square matrix (nind
rows, nind
columns)
1 2 3 4 5 6 | data(fake.f2, package="qtl")
fake.f2 <- calc.genoprob(fake.f2)
geno <- extract.geno(fake.f2)
G <- gensim.matrix(geno)
Glist <- gensim.matrix(geno, procedure="LOCO")
|
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