variance.decomposition: Decompose variance into genetic part and a random noise
In simecek/HPQTL: HPQTL
Description
Usage
Arguments
Details
Value
Examples
Description
Decompose variance into genetic part and a random noise
Usage
1
variance.decomposition(y, covar, G, package = c("regress", "QTLRel"), ...)
Arguments
y
a vector with phenotype
covar
a matrix with covariates
G
genetic similarity matrix
package
package to do variant component calculations
Details
Currently, regress function is much faster than QTLRel::estVC.
Value
4-elements list
Examples
1
2
3
4
5
6
data(fake.f2, package="qtl")
fake.f2 <- calc.genoprob(fake.f2)
geno <- extract.geno(fake.f2)
G <- gensim.matrix(geno)
variance.decomposition(fake.f2$pheno[,1], NULL, G)
simecek/HPQTL documentation built on May 29, 2019, 10 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Examples
Description
Decompose variance into genetic part and a random noise
Usage
1 | variance.decomposition(y, covar, G, package = c("regress", "QTLRel"), ...)
|
Arguments
y |
a vector with phenotype |
covar |
a matrix with covariates |
G |
genetic similarity matrix |
package |
package to do variant component calculations |
Details
Currently, regress function is much faster than QTLRel::estVC.
Value
4-elements list
Examples
1 2 3 4 5 6 | data(fake.f2, package="qtl")
fake.f2 <- calc.genoprob(fake.f2)
geno <- extract.geno(fake.f2)
G <- gensim.matrix(geno)
variance.decomposition(fake.f2$pheno[,1], NULL, G)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.