API for simingz/ctwas
Adjusting for genetic confounders in transcriptome-wide association studies improves discovery of risk genes of complex traits
| Global functions | |
|---|---|
| allele.qc | Source code |
| anno_susie | Man page Source code |
| coef.susie | Man page |
| compute_colSds | Source code |
| compute_ss | Man page Source code |
| convert_geno_to_LD_matrix | Man page Source code |
| ctwas | Man page Source code |
| ctwas_locus_plot | Man page Source code |
| ctwas_locus_plot_genetrack | Man page Source code |
| ctwas_rss | Man page Source code |
| ctwas_summarize_parameters | Man page Source code |
| filter_regions | Man page Source code |
| get_cs_correlation | Man page |
| get_purity | Source code |
| harmonize_wgt_ld | Man page |
| harmonize_z_ld | Man page Source code |
| impute_expr | Man page Source code |
| impute_expr_z | Man page |
| index_regions | Man page Source code |
| init_setup_rss | Source code |
| loglik.grad | Source code |
| n_in_CS | Source code |
| neg.loglik.logscale | Source code |
| predict.susie | Man page |
| preharmonize_z_ld | Man page |
| prep_exprvar | Man page Source code |
| prep_pgen | Man page Source code |
| prep_pvar | Man page Source code |
| read_bim | Man page Source code |
| read_expr | Man page Source code |
| read_exprvar | Man page Source code |
| read_ld_Rvar | Man page Source code |
| read_ld_Rvar_RDS | Man page Source code |
| read_pgen | Man page Source code |
| read_pvar | Man page Source code |
| read_var_info | Man page Source code |
| region2core | Man page Source code |
| set_X_attributes | Source code |
| single_effect_regression | Man page |
| single_effect_regression_rss | Man page |
| single_effect_regression_ss | Man page |
| susie | Man page |
| susieI | Man page Source code |
| susieI_rss | Man page Source code |
| susie_get_cs | Man page |
| susie_get_lfsr | Man page |
| susie_get_niter | Man page |
| susie_get_objective | Man page |
| susie_get_pip | Man page |
| susie_get_posterior_mean | Man page |
| susie_get_posterior_samples | Man page |
| susie_get_posterior_sd | Man page |
| susie_get_prior_variance | Man page |
| susie_get_residual_variance | Man page |
| susie_init_coef | Man page |
| susie_rss | Man page |
| susie_rss_lambda | Source code |
| susie_suff_stat | Man page |
| univariate_regression | Man page |
| write_ld_Rf | Man page Source code |
