read_pgen: Read pgen file into R
In simingz/ctwas: Adjusting for genetic confounders in transcriptome-wide association studies improves discovery of risk genes of complex traits
View source: R/ctwas_read_data.R
read_pgen R Documentation
Read pgen file into R
Description
Read pgen file into R
Usage
read_pgen(pgen, variantidx = NULL, meanimpute = F)
Arguments
pgen
.pgen file or .bed file
variantidx
variant index. If NULL, all variants will be extracted.
Value
A matrix, columns are allele count for each SNP, rows are
for each sample.
simingz/ctwas documentation built on Sept. 17, 2024, 10:55 p.m.
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View source: R/ctwas_read_data.R
| read_pgen | R Documentation |
Read pgen file into R
Description
Read pgen file into R
Usage
read_pgen(pgen, variantidx = NULL, meanimpute = F)
Arguments
pgen |
.pgen file or .bed file |
variantidx |
variant index. If NULL, all variants will be extracted. |
Value
A matrix, columns are allele count for each SNP, rows are for each sample.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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