ctwas_summarize_parameters: Summarize and plot cTWAS parameter estimates
In simingz/ctwas: Adjusting for genetic confounders in transcriptome-wide association studies improves discovery of risk genes of complex traits
ctwas_summarize_parameters R Documentation
Summarize and plot cTWAS parameter estimates
Description
Summarize and plot cTWAS parameter estimates
Usage
ctwas_summarize_parameters(
outputdir,
outname,
gwas_n = NA,
thin = 1,
plot_estimates = T
)
Arguments
outputdir
a string, the directory where ctwas output is stored
outname
a string, the output name
gwas_n
the sample size of the GWAS summary statistics
thin
the proportion of SNPs used for parameter estimation, as supplied to ctwas_rss
plot_estimates
if TRUE, return a plot of the estimated parameters
simingz/ctwas documentation built on Sept. 17, 2024, 10:55 p.m.
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| ctwas_summarize_parameters | R Documentation |
Summarize and plot cTWAS parameter estimates
Description
Summarize and plot cTWAS parameter estimates
Usage
ctwas_summarize_parameters(
outputdir,
outname,
gwas_n = NA,
thin = 1,
plot_estimates = T
)
Arguments
outputdir |
a string, the directory where ctwas output is stored |
outname |
a string, the output name |
gwas_n |
the sample size of the GWAS summary statistics |
thin |
the proportion of SNPs used for parameter estimation, as supplied to |
plot_estimates |
if TRUE, return a plot of the estimated parameters |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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