Files in simingz/ctwas
Adjusting for genetic confounders in transcriptome-wide association studies improves discovery of risk genes of complex traits
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/ctwas.R
R/ctwas_anno_susie.R
R/ctwas_convert_geno_to_LD_matrix.R
R/ctwas_harmonize_data.R
R/ctwas_impute_expr.R
R/ctwas_impute_expr_z.R
R/ctwas_plots.R
R/ctwas_process_regions.R
R/ctwas_read_data.R
R/ctwas_rss.R
R/ctwas_susieI.R
R/ctwas_susieI_rss.R
R/susie_compute_ss.R
R/susie_elbo.R
R/susie_elbo_rss.R
R/susie_elbo_ss.R
R/susie_estimate_residual_variance.R
R/susie_initialize.R
R/susie_initialize_rss.R
R/susie_predict.susie.R
R/susie_set_R_attributes.R
R/susie_set_X_attributes.R
R/susie_single_effect_regression.R
R/susie_single_effect_regression_rss.R
R/susie_single_effect_regression_ss.R
R/susie_sparse_multiplication.R
R/susie_susie.R
R/susie_susie_rss.R
R/susie_susie_ss.R
R/susie_susie_utils.R
R/susie_univariate_regression.R
R/susie_update_each_effect.R
R/susie_update_each_effect_rss.R
R/susie_update_each_effect_ss.R
README.md
_pkgdown.yml
ctwas.Rproj
data-raw/example_Y_zdf.R
docs/404.html
docs/LICENSE-text.html
docs/README_xin.html
docs/articles/ctwas_summary_statistics.html
docs/articles/ctwas_summary_statistics_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/ctwas_summary_statistics_files/figure-html/locus_plot_HPR-1.png
docs/articles/ctwas_summary_statistics_files/figure-html/summarize_parameters-1.png
docs/articles/ctwas_summary_statistics_files/figure-html/unnamed-chunk-24-1.png
docs/articles/harmonization.html
docs/articles/harmonization_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/index.html
docs/articles/regionmerging.html
docs/articles/regionmerging_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/transition.html
docs/articles/transition_files/figure-html/unnamed-chunk-28-1.png
docs/articles/transition_files/figure-html/unnamed-chunk-29-1.png
docs/articles/transition_files/figure-html/unnamed-chunk-32-1.png
docs/articles/transition_files/figure-html/unnamed-chunk-34-1.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/anno_susie.html
docs/reference/coef.susie.html
docs/reference/compute_ss.html
docs/reference/convert_geno_to_LD_matrix.html
docs/reference/ctwas.html
docs/reference/ctwas_locus_plot.html
docs/reference/ctwas_locus_plot_genetrack.html
docs/reference/ctwas_rss.html
docs/reference/ctwas_summarize_parameters.html
docs/reference/filter_regions.html
docs/reference/get_cs_correlation.html
docs/reference/harmonize_wgt_ld.html
docs/reference/harmonize_z_ld.html
docs/reference/impute_expr.html
docs/reference/impute_expr_z.html
docs/reference/index.html
docs/reference/index_regions.html
docs/reference/init_finalize.html
docs/reference/init_finalize_rss.html
docs/reference/muffled_corr.html
docs/reference/muffled_cov2cor.html
docs/reference/predict.susie.html
docs/reference/preharmonize_z_ld.html
docs/reference/prep_exprvar.html
docs/reference/prep_pgen.html
docs/reference/prep_pvar.html
docs/reference/read_bim.html
docs/reference/read_expr.html
docs/reference/read_exprvar.html
docs/reference/read_ld_Rvar.html
docs/reference/read_ld_Rvar_RDS.html
docs/reference/read_pgen.html
docs/reference/read_pvar.html
docs/reference/read_var_info.html
docs/reference/region2core.html
docs/reference/single_effect_regression.html
docs/reference/single_effect_regression_rss.html
docs/reference/susie.html
docs/reference/susieI.html
docs/reference/susieI_rss.html
docs/reference/susie_get_cs.html
docs/reference/susie_get_lfsr.html
docs/reference/susie_get_methods.html
docs/reference/susie_get_niter.html
docs/reference/susie_get_objective.html
docs/reference/susie_get_pip.html
docs/reference/susie_get_posterior_mean.html
docs/reference/susie_get_posterior_sd.html
docs/reference/susie_get_prior_variance.html
docs/reference/susie_get_residual_variance.html
docs/reference/susie_init_coef.html
docs/reference/susie_rss.html
docs/reference/univariate_regression-1.png
docs/reference/univariate_regression.html
docs/reference/update_each_effect.html
docs/reference/write_ld_Rf.html
docs/sitemap.xml
docs/workflow.png
inst/extdata/example_fusion_weights/Tissue.pos
inst/extdata/example_fusion_weights/Tissue/Tissue.gene1.wgt.RDat
inst/extdata/example_fusion_weights/Tissue/Tissue.gene10.wgt.RDat
inst/extdata/example_fusion_weights/Tissue/Tissue.gene11.wgt.RDat
inst/extdata/example_fusion_weights/Tissue/Tissue.gene12.wgt.RDat
inst/extdata/example_fusion_weights/Tissue/Tissue.gene13.wgt.RDat
inst/extdata/example_fusion_weights/Tissue/Tissue.gene14.wgt.RDat
inst/extdata/example_fusion_weights/Tissue/Tissue.gene15.wgt.RDat
inst/extdata/example_fusion_weights/Tissue/Tissue.gene16.wgt.RDat
inst/extdata/example_fusion_weights/Tissue/Tissue.gene17.wgt.RDat
inst/extdata/example_fusion_weights/Tissue/Tissue.gene18.wgt.RDat
inst/extdata/example_fusion_weights/Tissue/Tissue.gene19.wgt.RDat
inst/extdata/example_fusion_weights/Tissue/Tissue.gene2.wgt.RDat
inst/extdata/example_fusion_weights/Tissue/Tissue.gene20.wgt.RDat
inst/extdata/example_fusion_weights/Tissue/Tissue.gene3.wgt.RDat
inst/extdata/example_fusion_weights/Tissue/Tissue.gene4.wgt.RDat
inst/extdata/example_fusion_weights/Tissue/Tissue.gene5.wgt.RDat
inst/extdata/example_fusion_weights/Tissue/Tissue.gene6.wgt.RDat
inst/extdata/example_fusion_weights/Tissue/Tissue.gene7.wgt.RDat
inst/extdata/example_fusion_weights/Tissue/Tissue.gene8.wgt.RDat
inst/extdata/example_fusion_weights/Tissue/Tissue.gene9.wgt.RDat
inst/extdata/example_genotype_files/example_chr1.pgen
inst/extdata/example_genotype_files/example_chr1.psam
inst/extdata/example_genotype_files/example_chr1.pvar
inst/extdata/example_genotype_files/example_chr10.pgen
inst/extdata/example_genotype_files/example_chr10.psam
inst/extdata/example_genotype_files/example_chr10.pvar
inst/extdata/example_genotype_files/example_chr11.pgen
inst/extdata/example_genotype_files/example_chr11.psam
inst/extdata/example_genotype_files/example_chr11.pvar
inst/extdata/example_genotype_files/example_chr12.pgen
inst/extdata/example_genotype_files/example_chr12.psam
inst/extdata/example_genotype_files/example_chr12.pvar
inst/extdata/example_genotype_files/example_chr13.pgen
inst/extdata/example_genotype_files/example_chr13.psam
inst/extdata/example_genotype_files/example_chr13.pvar
inst/extdata/example_genotype_files/example_chr14.pgen
inst/extdata/example_genotype_files/example_chr14.psam
inst/extdata/example_genotype_files/example_chr14.pvar
inst/extdata/example_genotype_files/example_chr15.pgen
inst/extdata/example_genotype_files/example_chr15.psam
inst/extdata/example_genotype_files/example_chr15.pvar
inst/extdata/example_genotype_files/example_chr16.pgen
inst/extdata/example_genotype_files/example_chr16.psam
inst/extdata/example_genotype_files/example_chr16.pvar
inst/extdata/example_genotype_files/example_chr17.pgen
inst/extdata/example_genotype_files/example_chr17.psam
inst/extdata/example_genotype_files/example_chr17.pvar
inst/extdata/example_genotype_files/example_chr18.pgen
inst/extdata/example_genotype_files/example_chr18.psam
inst/extdata/example_genotype_files/example_chr18.pvar
inst/extdata/example_genotype_files/example_chr19.pgen
inst/extdata/example_genotype_files/example_chr19.psam
inst/extdata/example_genotype_files/example_chr19.pvar
inst/extdata/example_genotype_files/example_chr2.pgen
inst/extdata/example_genotype_files/example_chr2.psam
inst/extdata/example_genotype_files/example_chr2.pvar
inst/extdata/example_genotype_files/example_chr20.pgen
inst/extdata/example_genotype_files/example_chr20.psam
inst/extdata/example_genotype_files/example_chr20.pvar
inst/extdata/example_genotype_files/example_chr21.pgen
inst/extdata/example_genotype_files/example_chr21.psam
inst/extdata/example_genotype_files/example_chr21.pvar
inst/extdata/example_genotype_files/example_chr22.pgen
inst/extdata/example_genotype_files/example_chr22.psam
inst/extdata/example_genotype_files/example_chr22.pvar
inst/extdata/example_genotype_files/example_chr3.pgen
inst/extdata/example_genotype_files/example_chr3.psam
inst/extdata/example_genotype_files/example_chr3.pvar
inst/extdata/example_genotype_files/example_chr4.pgen
inst/extdata/example_genotype_files/example_chr4.psam
inst/extdata/example_genotype_files/example_chr4.pvar
inst/extdata/example_genotype_files/example_chr5.pgen
inst/extdata/example_genotype_files/example_chr5.psam
inst/extdata/example_genotype_files/example_chr5.pvar
inst/extdata/example_genotype_files/example_chr6.pgen
inst/extdata/example_genotype_files/example_chr6.psam
inst/extdata/example_genotype_files/example_chr6.pvar
inst/extdata/example_genotype_files/example_chr7.pgen
inst/extdata/example_genotype_files/example_chr7.psam
inst/extdata/example_genotype_files/example_chr7.pvar
inst/extdata/example_genotype_files/example_chr8.pgen
inst/extdata/example_genotype_files/example_chr8.psam
inst/extdata/example_genotype_files/example_chr8.pvar
inst/extdata/example_genotype_files/example_chr9.pgen
inst/extdata/example_genotype_files/example_chr9.psam
inst/extdata/example_genotype_files/example_chr9.pvar
inst/extdata/example_ld_R/example_chr1.R_snp.0_5.RDS
inst/extdata/example_ld_R/example_chr1.R_snp.0_5.Rvar
inst/extdata/example_ld_R/example_chr1.R_snp.125_155.RDS
inst/extdata/example_ld_R/example_chr1.R_snp.125_155.Rvar
inst/extdata/example_ld_R/example_chr1.R_snp.155_185.RDS
inst/extdata/example_ld_R/example_chr1.R_snp.155_185.Rvar
inst/extdata/example_ld_R/example_chr1.R_snp.185_215.RDS
inst/extdata/example_ld_R/example_chr1.R_snp.185_215.Rvar
inst/extdata/example_ld_R/example_chr1.R_snp.215_245.RDS
inst/extdata/example_ld_R/example_chr1.R_snp.215_245.Rvar
inst/extdata/example_ld_R/example_chr1.R_snp.245_275.RDS
inst/extdata/example_ld_R/example_chr1.R_snp.245_275.Rvar
inst/extdata/example_ld_R/example_chr1.R_snp.275_305.RDS
inst/extdata/example_ld_R/example_chr1.R_snp.275_305.Rvar
inst/extdata/example_ld_R/example_chr1.R_snp.305_335.RDS
inst/extdata/example_ld_R/example_chr1.R_snp.305_335.Rvar
inst/extdata/example_ld_R/example_chr1.R_snp.335_365.RDS
inst/extdata/example_ld_R/example_chr1.R_snp.335_365.Rvar
inst/extdata/example_ld_R/example_chr1.R_snp.35_65.RDS
inst/extdata/example_ld_R/example_chr1.R_snp.35_65.Rvar
inst/extdata/example_ld_R/example_chr1.R_snp.365_395.RDS
inst/extdata/example_ld_R/example_chr1.R_snp.365_395.Rvar
inst/extdata/example_ld_R/example_chr1.R_snp.395_425.RDS
inst/extdata/example_ld_R/example_chr1.R_snp.395_425.Rvar
inst/extdata/example_ld_R/example_chr1.R_snp.425_455.RDS
inst/extdata/example_ld_R/example_chr1.R_snp.425_455.Rvar
inst/extdata/example_ld_R/example_chr1.R_snp.455_485.RDS
inst/extdata/example_ld_R/example_chr1.R_snp.455_485.Rvar
inst/extdata/example_ld_R/example_chr1.R_snp.5_35.RDS
inst/extdata/example_ld_R/example_chr1.R_snp.5_35.Rvar
inst/extdata/example_ld_R/example_chr1.R_snp.65_95.RDS
inst/extdata/example_ld_R/example_chr1.R_snp.65_95.Rvar
inst/extdata/example_ld_R/example_chr1.R_snp.95_125.RDS
inst/extdata/example_ld_R/example_chr1.R_snp.95_125.Rvar
inst/extdata/example_ld_R/example_chr10.R_snp.0_5.RDS
inst/extdata/example_ld_R/example_chr10.R_snp.0_5.Rvar
inst/extdata/example_ld_R/example_chr10.R_snp.125_155.RDS
inst/extdata/example_ld_R/example_chr10.R_snp.125_155.Rvar
inst/extdata/example_ld_R/example_chr10.R_snp.155_185.RDS
inst/extdata/example_ld_R/example_chr10.R_snp.155_185.Rvar
inst/extdata/example_ld_R/example_chr10.R_snp.185_215.RDS
inst/extdata/example_ld_R/example_chr10.R_snp.185_215.Rvar
inst/extdata/example_ld_R/example_chr10.R_snp.215_245.RDS
inst/extdata/example_ld_R/example_chr10.R_snp.215_245.Rvar
inst/extdata/example_ld_R/example_chr10.R_snp.245_275.RDS
inst/extdata/example_ld_R/example_chr10.R_snp.245_275.Rvar
inst/extdata/example_ld_R/example_chr10.R_snp.275_305.RDS
inst/extdata/example_ld_R/example_chr10.R_snp.275_305.Rvar
inst/extdata/example_ld_R/example_chr10.R_snp.305_335.RDS
inst/extdata/example_ld_R/example_chr10.R_snp.305_335.Rvar
inst/extdata/example_ld_R/example_chr10.R_snp.335_365.RDS
inst/extdata/example_ld_R/example_chr10.R_snp.335_365.Rvar
inst/extdata/example_ld_R/example_chr10.R_snp.35_65.RDS
inst/extdata/example_ld_R/example_chr10.R_snp.35_65.Rvar
inst/extdata/example_ld_R/example_chr10.R_snp.365_395.RDS
inst/extdata/example_ld_R/example_chr10.R_snp.365_395.Rvar
inst/extdata/example_ld_R/example_chr10.R_snp.395_425.RDS
inst/extdata/example_ld_R/example_chr10.R_snp.395_425.Rvar
inst/extdata/example_ld_R/example_chr10.R_snp.425_455.RDS
inst/extdata/example_ld_R/example_chr10.R_snp.425_455.Rvar
inst/extdata/example_ld_R/example_chr10.R_snp.455_485.RDS
inst/extdata/example_ld_R/example_chr10.R_snp.455_485.Rvar
inst/extdata/example_ld_R/example_chr10.R_snp.5_35.RDS
inst/extdata/example_ld_R/example_chr10.R_snp.5_35.Rvar
inst/extdata/example_ld_R/example_chr10.R_snp.65_95.RDS
inst/extdata/example_ld_R/example_chr10.R_snp.65_95.Rvar
inst/extdata/example_ld_R/example_chr10.R_snp.95_125.RDS
inst/extdata/example_ld_R/example_chr10.R_snp.95_125.Rvar
inst/extdata/example_ld_R/example_chr11.R_snp.0_5.RDS
inst/extdata/example_ld_R/example_chr11.R_snp.0_5.Rvar
inst/extdata/example_ld_R/example_chr11.R_snp.125_155.RDS
inst/extdata/example_ld_R/example_chr11.R_snp.125_155.Rvar
inst/extdata/example_ld_R/example_chr11.R_snp.155_185.RDS
inst/extdata/example_ld_R/example_chr11.R_snp.155_185.Rvar
inst/extdata/example_ld_R/example_chr11.R_snp.185_215.RDS
inst/extdata/example_ld_R/example_chr11.R_snp.185_215.Rvar
inst/extdata/example_ld_R/example_chr11.R_snp.215_245.RDS
inst/extdata/example_ld_R/example_chr11.R_snp.215_245.Rvar
inst/extdata/example_ld_R/example_chr11.R_snp.245_275.RDS
inst/extdata/example_ld_R/example_chr11.R_snp.245_275.Rvar
inst/extdata/example_ld_R/example_chr11.R_snp.275_305.RDS
inst/extdata/example_ld_R/example_chr11.R_snp.275_305.Rvar
inst/extdata/example_ld_R/example_chr11.R_snp.305_335.RDS
inst/extdata/example_ld_R/example_chr11.R_snp.305_335.Rvar
inst/extdata/example_ld_R/example_chr11.R_snp.335_365.RDS
inst/extdata/example_ld_R/example_chr11.R_snp.335_365.Rvar
inst/extdata/example_ld_R/example_chr11.R_snp.35_65.RDS
inst/extdata/example_ld_R/example_chr11.R_snp.35_65.Rvar
inst/extdata/example_ld_R/example_chr11.R_snp.365_395.RDS
inst/extdata/example_ld_R/example_chr11.R_snp.365_395.Rvar
inst/extdata/example_ld_R/example_chr11.R_snp.395_425.RDS
inst/extdata/example_ld_R/example_chr11.R_snp.395_425.Rvar
inst/extdata/example_ld_R/example_chr11.R_snp.425_455.RDS
inst/extdata/example_ld_R/example_chr11.R_snp.425_455.Rvar
inst/extdata/example_ld_R/example_chr11.R_snp.455_485.RDS
inst/extdata/example_ld_R/example_chr11.R_snp.455_485.Rvar
inst/extdata/example_ld_R/example_chr11.R_snp.5_35.RDS
inst/extdata/example_ld_R/example_chr11.R_snp.5_35.Rvar
inst/extdata/example_ld_R/example_chr11.R_snp.65_95.RDS
inst/extdata/example_ld_R/example_chr11.R_snp.65_95.Rvar
inst/extdata/example_ld_R/example_chr11.R_snp.95_125.RDS
inst/extdata/example_ld_R/example_chr11.R_snp.95_125.Rvar
inst/extdata/example_ld_R/example_chr12.R_snp.0_5.RDS
inst/extdata/example_ld_R/example_chr12.R_snp.0_5.Rvar
inst/extdata/example_ld_R/example_chr12.R_snp.125_155.RDS
inst/extdata/example_ld_R/example_chr12.R_snp.125_155.Rvar
inst/extdata/example_ld_R/example_chr12.R_snp.155_185.RDS
inst/extdata/example_ld_R/example_chr12.R_snp.155_185.Rvar
inst/extdata/example_ld_R/example_chr12.R_snp.185_215.RDS
inst/extdata/example_ld_R/example_chr12.R_snp.185_215.Rvar
inst/extdata/example_ld_R/example_chr12.R_snp.215_245.RDS
inst/extdata/example_ld_R/example_chr12.R_snp.215_245.Rvar
inst/extdata/example_ld_R/example_chr12.R_snp.245_275.RDS
inst/extdata/example_ld_R/example_chr12.R_snp.245_275.Rvar
inst/extdata/example_ld_R/example_chr12.R_snp.275_305.RDS
inst/extdata/example_ld_R/example_chr12.R_snp.275_305.Rvar
inst/extdata/example_ld_R/example_chr12.R_snp.305_335.RDS
inst/extdata/example_ld_R/example_chr12.R_snp.305_335.Rvar
inst/extdata/example_ld_R/example_chr12.R_snp.335_365.RDS
inst/extdata/example_ld_R/example_chr12.R_snp.335_365.Rvar
inst/extdata/example_ld_R/example_chr12.R_snp.35_65.RDS
inst/extdata/example_ld_R/example_chr12.R_snp.35_65.Rvar
inst/extdata/example_ld_R/example_chr12.R_snp.365_395.RDS
inst/extdata/example_ld_R/example_chr12.R_snp.365_395.Rvar
inst/extdata/example_ld_R/example_chr12.R_snp.395_425.RDS
inst/extdata/example_ld_R/example_chr12.R_snp.395_425.Rvar
inst/extdata/example_ld_R/example_chr12.R_snp.425_455.RDS
inst/extdata/example_ld_R/example_chr12.R_snp.425_455.Rvar
inst/extdata/example_ld_R/example_chr12.R_snp.455_485.RDS
inst/extdata/example_ld_R/example_chr12.R_snp.455_485.Rvar
inst/extdata/example_ld_R/example_chr12.R_snp.5_35.RDS
inst/extdata/example_ld_R/example_chr12.R_snp.5_35.Rvar
inst/extdata/example_ld_R/example_chr12.R_snp.65_95.RDS
inst/extdata/example_ld_R/example_chr12.R_snp.65_95.Rvar
inst/extdata/example_ld_R/example_chr12.R_snp.95_125.RDS
inst/extdata/example_ld_R/example_chr12.R_snp.95_125.Rvar
inst/extdata/example_ld_R/example_chr13.R_snp.0_5.RDS
inst/extdata/example_ld_R/example_chr13.R_snp.0_5.Rvar
inst/extdata/example_ld_R/example_chr13.R_snp.125_155.RDS
inst/extdata/example_ld_R/example_chr13.R_snp.125_155.Rvar
inst/extdata/example_ld_R/example_chr13.R_snp.155_185.RDS
inst/extdata/example_ld_R/example_chr13.R_snp.155_185.Rvar
inst/extdata/example_ld_R/example_chr13.R_snp.185_215.RDS
inst/extdata/example_ld_R/example_chr13.R_snp.185_215.Rvar
inst/extdata/example_ld_R/example_chr13.R_snp.215_245.RDS
inst/extdata/example_ld_R/example_chr13.R_snp.215_245.Rvar
inst/extdata/example_ld_R/example_chr13.R_snp.245_275.RDS
inst/extdata/example_ld_R/example_chr13.R_snp.245_275.Rvar
inst/extdata/example_ld_R/example_chr13.R_snp.275_305.RDS
inst/extdata/example_ld_R/example_chr13.R_snp.275_305.Rvar
inst/extdata/example_ld_R/example_chr13.R_snp.305_335.RDS
inst/extdata/example_ld_R/example_chr13.R_snp.305_335.Rvar
inst/extdata/example_ld_R/example_chr13.R_snp.335_365.RDS
inst/extdata/example_ld_R/example_chr13.R_snp.335_365.Rvar
inst/extdata/example_ld_R/example_chr13.R_snp.35_65.RDS
inst/extdata/example_ld_R/example_chr13.R_snp.35_65.Rvar
inst/extdata/example_ld_R/example_chr13.R_snp.365_395.RDS
inst/extdata/example_ld_R/example_chr13.R_snp.365_395.Rvar
inst/extdata/example_ld_R/example_chr13.R_snp.395_425.RDS
inst/extdata/example_ld_R/example_chr13.R_snp.395_425.Rvar
inst/extdata/example_ld_R/example_chr13.R_snp.425_455.RDS
inst/extdata/example_ld_R/example_chr13.R_snp.425_455.Rvar
inst/extdata/example_ld_R/example_chr13.R_snp.455_485.RDS
inst/extdata/example_ld_R/example_chr13.R_snp.455_485.Rvar
inst/extdata/example_ld_R/example_chr13.R_snp.5_35.RDS
inst/extdata/example_ld_R/example_chr13.R_snp.5_35.Rvar
inst/extdata/example_ld_R/example_chr13.R_snp.65_95.RDS
inst/extdata/example_ld_R/example_chr13.R_snp.65_95.Rvar
inst/extdata/example_ld_R/example_chr13.R_snp.95_125.RDS
inst/extdata/example_ld_R/example_chr13.R_snp.95_125.Rvar
inst/extdata/example_ld_R/example_chr14.R_snp.0_5.RDS
inst/extdata/example_ld_R/example_chr14.R_snp.0_5.Rvar
inst/extdata/example_ld_R/example_chr14.R_snp.125_155.RDS
inst/extdata/example_ld_R/example_chr14.R_snp.125_155.Rvar
inst/extdata/example_ld_R/example_chr14.R_snp.155_185.RDS
inst/extdata/example_ld_R/example_chr14.R_snp.155_185.Rvar
inst/extdata/example_ld_R/example_chr14.R_snp.185_215.RDS
inst/extdata/example_ld_R/example_chr14.R_snp.185_215.Rvar
inst/extdata/example_ld_R/example_chr14.R_snp.215_245.RDS
inst/extdata/example_ld_R/example_chr14.R_snp.215_245.Rvar
inst/extdata/example_ld_R/example_chr14.R_snp.245_275.RDS
inst/extdata/example_ld_R/example_chr14.R_snp.245_275.Rvar
inst/extdata/example_ld_R/example_chr14.R_snp.275_305.RDS
inst/extdata/example_ld_R/example_chr14.R_snp.275_305.Rvar
inst/extdata/example_ld_R/example_chr14.R_snp.305_335.RDS
inst/extdata/example_ld_R/example_chr14.R_snp.305_335.Rvar
inst/extdata/example_ld_R/example_chr14.R_snp.335_365.RDS
inst/extdata/example_ld_R/example_chr14.R_snp.335_365.Rvar
inst/extdata/example_ld_R/example_chr14.R_snp.35_65.RDS
inst/extdata/example_ld_R/example_chr14.R_snp.35_65.Rvar
inst/extdata/example_ld_R/example_chr14.R_snp.365_395.RDS
inst/extdata/example_ld_R/example_chr14.R_snp.365_395.Rvar
inst/extdata/example_ld_R/example_chr14.R_snp.395_425.RDS
inst/extdata/example_ld_R/example_chr14.R_snp.395_425.Rvar
inst/extdata/example_ld_R/example_chr14.R_snp.425_455.RDS
inst/extdata/example_ld_R/example_chr14.R_snp.425_455.Rvar
inst/extdata/example_ld_R/example_chr14.R_snp.455_485.RDS
inst/extdata/example_ld_R/example_chr14.R_snp.455_485.Rvar
inst/extdata/example_ld_R/example_chr14.R_snp.5_35.RDS
inst/extdata/example_ld_R/example_chr14.R_snp.5_35.Rvar
inst/extdata/example_ld_R/example_chr14.R_snp.65_95.RDS
inst/extdata/example_ld_R/example_chr14.R_snp.65_95.Rvar
inst/extdata/example_ld_R/example_chr14.R_snp.95_125.RDS
inst/extdata/example_ld_R/example_chr14.R_snp.95_125.Rvar
inst/extdata/example_ld_R/example_chr15.R_snp.0_5.RDS
inst/extdata/example_ld_R/example_chr15.R_snp.0_5.Rvar
inst/extdata/example_ld_R/example_chr15.R_snp.125_155.RDS
inst/extdata/example_ld_R/example_chr15.R_snp.125_155.Rvar
inst/extdata/example_ld_R/example_chr15.R_snp.155_185.RDS
inst/extdata/example_ld_R/example_chr15.R_snp.155_185.Rvar
inst/extdata/example_ld_R/example_chr15.R_snp.185_215.RDS
inst/extdata/example_ld_R/example_chr15.R_snp.185_215.Rvar
inst/extdata/example_ld_R/example_chr15.R_snp.215_245.RDS
inst/extdata/example_ld_R/example_chr15.R_snp.215_245.Rvar
inst/extdata/example_ld_R/example_chr15.R_snp.245_275.RDS
inst/extdata/example_ld_R/example_chr15.R_snp.245_275.Rvar
inst/extdata/example_ld_R/example_chr15.R_snp.275_305.RDS
inst/extdata/example_ld_R/example_chr15.R_snp.275_305.Rvar
inst/extdata/example_ld_R/example_chr15.R_snp.305_335.RDS
inst/extdata/example_ld_R/example_chr15.R_snp.305_335.Rvar
inst/extdata/example_ld_R/example_chr15.R_snp.335_365.RDS
inst/extdata/example_ld_R/example_chr15.R_snp.335_365.Rvar
inst/extdata/example_ld_R/example_chr15.R_snp.35_65.RDS
inst/extdata/example_ld_R/example_chr15.R_snp.35_65.Rvar
inst/extdata/example_ld_R/example_chr15.R_snp.365_395.RDS
inst/extdata/example_ld_R/example_chr15.R_snp.365_395.Rvar
inst/extdata/example_ld_R/example_chr15.R_snp.395_425.RDS
inst/extdata/example_ld_R/example_chr15.R_snp.395_425.Rvar
inst/extdata/example_ld_R/example_chr15.R_snp.425_455.RDS
inst/extdata/example_ld_R/example_chr15.R_snp.425_455.Rvar
inst/extdata/example_ld_R/example_chr15.R_snp.455_485.RDS
inst/extdata/example_ld_R/example_chr15.R_snp.455_485.Rvar
inst/extdata/example_ld_R/example_chr15.R_snp.5_35.RDS
inst/extdata/example_ld_R/example_chr15.R_snp.5_35.Rvar
inst/extdata/example_ld_R/example_chr15.R_snp.65_95.RDS
inst/extdata/example_ld_R/example_chr15.R_snp.65_95.Rvar
inst/extdata/example_ld_R/example_chr15.R_snp.95_125.RDS
inst/extdata/example_ld_R/example_chr15.R_snp.95_125.Rvar
inst/extdata/example_ld_R/example_chr16.R_snp.0_5.RDS
inst/extdata/example_ld_R/example_chr16.R_snp.0_5.Rvar
inst/extdata/example_ld_R/example_chr16.R_snp.125_155.RDS
inst/extdata/example_ld_R/example_chr16.R_snp.125_155.Rvar
inst/extdata/example_ld_R/example_chr16.R_snp.155_185.RDS
inst/extdata/example_ld_R/example_chr16.R_snp.155_185.Rvar
inst/extdata/example_ld_R/example_chr16.R_snp.185_215.RDS
inst/extdata/example_ld_R/example_chr16.R_snp.185_215.Rvar
inst/extdata/example_ld_R/example_chr16.R_snp.215_245.RDS
inst/extdata/example_ld_R/example_chr16.R_snp.215_245.Rvar
inst/extdata/example_ld_R/example_chr16.R_snp.245_275.RDS
inst/extdata/example_ld_R/example_chr16.R_snp.245_275.Rvar
inst/extdata/example_ld_R/example_chr16.R_snp.275_305.RDS
inst/extdata/example_ld_R/example_chr16.R_snp.275_305.Rvar
inst/extdata/example_ld_R/example_chr16.R_snp.305_335.RDS
inst/extdata/example_ld_R/example_chr16.R_snp.305_335.Rvar
inst/extdata/example_ld_R/example_chr16.R_snp.335_365.RDS
inst/extdata/example_ld_R/example_chr16.R_snp.335_365.Rvar
inst/extdata/example_ld_R/example_chr16.R_snp.35_65.RDS
inst/extdata/example_ld_R/example_chr16.R_snp.35_65.Rvar
inst/extdata/example_ld_R/example_chr16.R_snp.365_395.RDS
inst/extdata/example_ld_R/example_chr16.R_snp.365_395.Rvar
inst/extdata/example_ld_R/example_chr16.R_snp.395_425.RDS
inst/extdata/example_ld_R/example_chr16.R_snp.395_425.Rvar
inst/extdata/example_ld_R/example_chr16.R_snp.425_455.RDS
inst/extdata/example_ld_R/example_chr16.R_snp.425_455.Rvar
inst/extdata/example_ld_R/example_chr16.R_snp.455_485.RDS
inst/extdata/example_ld_R/example_chr16.R_snp.455_485.Rvar
inst/extdata/example_ld_R/example_chr16.R_snp.5_35.RDS
inst/extdata/example_ld_R/example_chr16.R_snp.5_35.Rvar
inst/extdata/example_ld_R/example_chr16.R_snp.65_95.RDS
inst/extdata/example_ld_R/example_chr16.R_snp.65_95.Rvar
inst/extdata/example_ld_R/example_chr16.R_snp.95_125.RDS
inst/extdata/example_ld_R/example_chr16.R_snp.95_125.Rvar
inst/extdata/example_ld_R/example_chr17.R_snp.0_5.RDS
inst/extdata/example_ld_R/example_chr17.R_snp.0_5.Rvar
inst/extdata/example_ld_R/example_chr17.R_snp.125_155.RDS
inst/extdata/example_ld_R/example_chr17.R_snp.125_155.Rvar
inst/extdata/example_ld_R/example_chr17.R_snp.155_185.RDS
inst/extdata/example_ld_R/example_chr17.R_snp.155_185.Rvar
inst/extdata/example_ld_R/example_chr17.R_snp.185_215.RDS
inst/extdata/example_ld_R/example_chr17.R_snp.185_215.Rvar
inst/extdata/example_ld_R/example_chr17.R_snp.215_245.RDS
inst/extdata/example_ld_R/example_chr17.R_snp.215_245.Rvar
inst/extdata/example_ld_R/example_chr17.R_snp.245_275.RDS
inst/extdata/example_ld_R/example_chr17.R_snp.245_275.Rvar
inst/extdata/example_ld_R/example_chr17.R_snp.275_305.RDS
inst/extdata/example_ld_R/example_chr17.R_snp.275_305.Rvar
inst/extdata/example_ld_R/example_chr17.R_snp.305_335.RDS
inst/extdata/example_ld_R/example_chr17.R_snp.305_335.Rvar
inst/extdata/example_ld_R/example_chr17.R_snp.335_365.RDS
inst/extdata/example_ld_R/example_chr17.R_snp.335_365.Rvar
inst/extdata/example_ld_R/example_chr17.R_snp.35_65.RDS
inst/extdata/example_ld_R/example_chr17.R_snp.35_65.Rvar
inst/extdata/example_ld_R/example_chr17.R_snp.365_395.RDS
inst/extdata/example_ld_R/example_chr17.R_snp.365_395.Rvar
inst/extdata/example_ld_R/example_chr17.R_snp.395_425.RDS
inst/extdata/example_ld_R/example_chr17.R_snp.395_425.Rvar
inst/extdata/example_ld_R/example_chr17.R_snp.425_455.RDS
inst/extdata/example_ld_R/example_chr17.R_snp.425_455.Rvar
inst/extdata/example_ld_R/example_chr17.R_snp.455_485.RDS
inst/extdata/example_ld_R/example_chr17.R_snp.455_485.Rvar
inst/extdata/example_ld_R/example_chr17.R_snp.5_35.RDS
inst/extdata/example_ld_R/example_chr17.R_snp.5_35.Rvar
inst/extdata/example_ld_R/example_chr17.R_snp.65_95.RDS
inst/extdata/example_ld_R/example_chr17.R_snp.65_95.Rvar
inst/extdata/example_ld_R/example_chr17.R_snp.95_125.RDS
inst/extdata/example_ld_R/example_chr17.R_snp.95_125.Rvar
inst/extdata/example_ld_R/example_chr18.R_snp.0_5.RDS
inst/extdata/example_ld_R/example_chr18.R_snp.0_5.Rvar
inst/extdata/example_ld_R/example_chr18.R_snp.125_155.RDS
inst/extdata/example_ld_R/example_chr18.R_snp.125_155.Rvar
inst/extdata/example_ld_R/example_chr18.R_snp.155_185.RDS
inst/extdata/example_ld_R/example_chr18.R_snp.155_185.Rvar
inst/extdata/example_ld_R/example_chr18.R_snp.185_215.RDS
inst/extdata/example_ld_R/example_chr18.R_snp.185_215.Rvar
inst/extdata/example_ld_R/example_chr18.R_snp.215_245.RDS
inst/extdata/example_ld_R/example_chr18.R_snp.215_245.Rvar
inst/extdata/example_ld_R/example_chr18.R_snp.245_275.RDS
inst/extdata/example_ld_R/example_chr18.R_snp.245_275.Rvar
inst/extdata/example_ld_R/example_chr18.R_snp.275_305.RDS
inst/extdata/example_ld_R/example_chr18.R_snp.275_305.Rvar
inst/extdata/example_ld_R/example_chr18.R_snp.305_335.RDS
inst/extdata/example_ld_R/example_chr18.R_snp.305_335.Rvar
inst/extdata/example_ld_R/example_chr18.R_snp.335_365.RDS
inst/extdata/example_ld_R/example_chr18.R_snp.335_365.Rvar
inst/extdata/example_ld_R/example_chr18.R_snp.35_65.RDS
inst/extdata/example_ld_R/example_chr18.R_snp.35_65.Rvar
inst/extdata/example_ld_R/example_chr18.R_snp.365_395.RDS
inst/extdata/example_ld_R/example_chr18.R_snp.365_395.Rvar
inst/extdata/example_ld_R/example_chr18.R_snp.395_425.RDS
inst/extdata/example_ld_R/example_chr18.R_snp.395_425.Rvar
inst/extdata/example_ld_R/example_chr18.R_snp.425_455.RDS
inst/extdata/example_ld_R/example_chr18.R_snp.425_455.Rvar
inst/extdata/example_ld_R/example_chr18.R_snp.455_485.RDS
inst/extdata/example_ld_R/example_chr18.R_snp.455_485.Rvar
inst/extdata/example_ld_R/example_chr18.R_snp.5_35.RDS
inst/extdata/example_ld_R/example_chr18.R_snp.5_35.Rvar
inst/extdata/example_ld_R/example_chr18.R_snp.65_95.RDS
inst/extdata/example_ld_R/example_chr18.R_snp.65_95.Rvar
inst/extdata/example_ld_R/example_chr18.R_snp.95_125.RDS
inst/extdata/example_ld_R/example_chr18.R_snp.95_125.Rvar
inst/extdata/example_ld_R/example_chr19.R_snp.0_5.RDS
inst/extdata/example_ld_R/example_chr19.R_snp.0_5.Rvar
inst/extdata/example_ld_R/example_chr19.R_snp.125_155.RDS
inst/extdata/example_ld_R/example_chr19.R_snp.125_155.Rvar
inst/extdata/example_ld_R/example_chr19.R_snp.155_185.RDS
inst/extdata/example_ld_R/example_chr19.R_snp.155_185.Rvar
inst/extdata/example_ld_R/example_chr19.R_snp.185_215.RDS
inst/extdata/example_ld_R/example_chr19.R_snp.185_215.Rvar
inst/extdata/example_ld_R/example_chr19.R_snp.215_245.RDS
inst/extdata/example_ld_R/example_chr19.R_snp.215_245.Rvar
inst/extdata/example_ld_R/example_chr19.R_snp.245_275.RDS
inst/extdata/example_ld_R/example_chr19.R_snp.245_275.Rvar
inst/extdata/example_ld_R/example_chr19.R_snp.275_305.RDS
inst/extdata/example_ld_R/example_chr19.R_snp.275_305.Rvar
inst/extdata/example_ld_R/example_chr19.R_snp.305_335.RDS
inst/extdata/example_ld_R/example_chr19.R_snp.305_335.Rvar
inst/extdata/example_ld_R/example_chr19.R_snp.335_365.RDS
inst/extdata/example_ld_R/example_chr19.R_snp.335_365.Rvar
inst/extdata/example_ld_R/example_chr19.R_snp.35_65.RDS
inst/extdata/example_ld_R/example_chr19.R_snp.35_65.Rvar
inst/extdata/example_ld_R/example_chr19.R_snp.365_395.RDS
inst/extdata/example_ld_R/example_chr19.R_snp.365_395.Rvar
inst/extdata/example_ld_R/example_chr19.R_snp.395_425.RDS
inst/extdata/example_ld_R/example_chr19.R_snp.395_425.Rvar
inst/extdata/example_ld_R/example_chr19.R_snp.425_455.RDS
inst/extdata/example_ld_R/example_chr19.R_snp.425_455.Rvar
inst/extdata/example_ld_R/example_chr19.R_snp.455_485.RDS
inst/extdata/example_ld_R/example_chr19.R_snp.455_485.Rvar
inst/extdata/example_ld_R/example_chr19.R_snp.5_35.RDS
inst/extdata/example_ld_R/example_chr19.R_snp.5_35.Rvar
inst/extdata/example_ld_R/example_chr19.R_snp.65_95.RDS
inst/extdata/example_ld_R/example_chr19.R_snp.65_95.Rvar
inst/extdata/example_ld_R/example_chr19.R_snp.95_125.RDS
inst/extdata/example_ld_R/example_chr19.R_snp.95_125.Rvar
inst/extdata/example_ld_R/example_chr2.R_snp.0_5.RDS
inst/extdata/example_ld_R/example_chr2.R_snp.0_5.Rvar
inst/extdata/example_ld_R/example_chr2.R_snp.125_155.RDS
inst/extdata/example_ld_R/example_chr2.R_snp.125_155.Rvar
inst/extdata/example_ld_R/example_chr2.R_snp.155_185.RDS
inst/extdata/example_ld_R/example_chr2.R_snp.155_185.Rvar
inst/extdata/example_ld_R/example_chr2.R_snp.185_215.RDS
inst/extdata/example_ld_R/example_chr2.R_snp.185_215.Rvar
inst/extdata/example_ld_R/example_chr2.R_snp.215_245.RDS
inst/extdata/example_ld_R/example_chr2.R_snp.215_245.Rvar
inst/extdata/example_ld_R/example_chr2.R_snp.245_275.RDS
inst/extdata/example_ld_R/example_chr2.R_snp.245_275.Rvar
inst/extdata/example_ld_R/example_chr2.R_snp.275_305.RDS
inst/extdata/example_ld_R/example_chr2.R_snp.275_305.Rvar
inst/extdata/example_ld_R/example_chr2.R_snp.305_335.RDS
inst/extdata/example_ld_R/example_chr2.R_snp.305_335.Rvar
inst/extdata/example_ld_R/example_chr2.R_snp.335_365.RDS
inst/extdata/example_ld_R/example_chr2.R_snp.335_365.Rvar
inst/extdata/example_ld_R/example_chr2.R_snp.35_65.RDS
inst/extdata/example_ld_R/example_chr2.R_snp.35_65.Rvar
inst/extdata/example_ld_R/example_chr2.R_snp.365_395.RDS
inst/extdata/example_ld_R/example_chr2.R_snp.365_395.Rvar
inst/extdata/example_ld_R/example_chr2.R_snp.395_425.RDS
inst/extdata/example_ld_R/example_chr2.R_snp.395_425.Rvar
inst/extdata/example_ld_R/example_chr2.R_snp.425_455.RDS
inst/extdata/example_ld_R/example_chr2.R_snp.425_455.Rvar
inst/extdata/example_ld_R/example_chr2.R_snp.455_485.RDS
inst/extdata/example_ld_R/example_chr2.R_snp.455_485.Rvar
inst/extdata/example_ld_R/example_chr2.R_snp.5_35.RDS
inst/extdata/example_ld_R/example_chr2.R_snp.5_35.Rvar
inst/extdata/example_ld_R/example_chr2.R_snp.65_95.RDS
inst/extdata/example_ld_R/example_chr2.R_snp.65_95.Rvar
inst/extdata/example_ld_R/example_chr2.R_snp.95_125.RDS
inst/extdata/example_ld_R/example_chr2.R_snp.95_125.Rvar
inst/extdata/example_ld_R/example_chr20.R_snp.0_5.RDS
inst/extdata/example_ld_R/example_chr20.R_snp.0_5.Rvar
inst/extdata/example_ld_R/example_chr20.R_snp.125_155.RDS
inst/extdata/example_ld_R/example_chr20.R_snp.125_155.Rvar
inst/extdata/example_ld_R/example_chr20.R_snp.155_185.RDS
inst/extdata/example_ld_R/example_chr20.R_snp.155_185.Rvar
inst/extdata/example_ld_R/example_chr20.R_snp.185_215.RDS
inst/extdata/example_ld_R/example_chr20.R_snp.185_215.Rvar
inst/extdata/example_ld_R/example_chr20.R_snp.215_245.RDS
inst/extdata/example_ld_R/example_chr20.R_snp.215_245.Rvar
inst/extdata/example_ld_R/example_chr20.R_snp.245_275.RDS
inst/extdata/example_ld_R/example_chr20.R_snp.245_275.Rvar
inst/extdata/example_ld_R/example_chr20.R_snp.275_305.RDS
inst/extdata/example_ld_R/example_chr20.R_snp.275_305.Rvar
inst/extdata/example_ld_R/example_chr20.R_snp.305_335.RDS
inst/extdata/example_ld_R/example_chr20.R_snp.305_335.Rvar
inst/extdata/example_ld_R/example_chr20.R_snp.335_365.RDS
inst/extdata/example_ld_R/example_chr20.R_snp.335_365.Rvar
inst/extdata/example_ld_R/example_chr20.R_snp.35_65.RDS
inst/extdata/example_ld_R/example_chr20.R_snp.35_65.Rvar
inst/extdata/example_ld_R/example_chr20.R_snp.365_395.RDS
inst/extdata/example_ld_R/example_chr20.R_snp.365_395.Rvar
inst/extdata/example_ld_R/example_chr20.R_snp.395_425.RDS
inst/extdata/example_ld_R/example_chr20.R_snp.395_425.Rvar
inst/extdata/example_ld_R/example_chr20.R_snp.425_455.RDS
inst/extdata/example_ld_R/example_chr20.R_snp.425_455.Rvar
inst/extdata/example_ld_R/example_chr20.R_snp.455_485.RDS
inst/extdata/example_ld_R/example_chr20.R_snp.455_485.Rvar
inst/extdata/example_ld_R/example_chr20.R_snp.5_35.RDS
inst/extdata/example_ld_R/example_chr20.R_snp.5_35.Rvar
inst/extdata/example_ld_R/example_chr20.R_snp.65_95.RDS
inst/extdata/example_ld_R/example_chr20.R_snp.65_95.Rvar
inst/extdata/example_ld_R/example_chr20.R_snp.95_125.RDS
inst/extdata/example_ld_R/example_chr20.R_snp.95_125.Rvar
inst/extdata/example_ld_R/example_chr21.R_snp.0_5.RDS
inst/extdata/example_ld_R/example_chr21.R_snp.0_5.Rvar
inst/extdata/example_ld_R/example_chr21.R_snp.125_155.RDS
inst/extdata/example_ld_R/example_chr21.R_snp.125_155.Rvar
inst/extdata/example_ld_R/example_chr21.R_snp.155_185.RDS
inst/extdata/example_ld_R/example_chr21.R_snp.155_185.Rvar
inst/extdata/example_ld_R/example_chr21.R_snp.185_215.RDS
inst/extdata/example_ld_R/example_chr21.R_snp.185_215.Rvar
inst/extdata/example_ld_R/example_chr21.R_snp.215_245.RDS
inst/extdata/example_ld_R/example_chr21.R_snp.215_245.Rvar
inst/extdata/example_ld_R/example_chr21.R_snp.245_275.RDS
inst/extdata/example_ld_R/example_chr21.R_snp.245_275.Rvar
inst/extdata/example_ld_R/example_chr21.R_snp.275_305.RDS
inst/extdata/example_ld_R/example_chr21.R_snp.275_305.Rvar
inst/extdata/example_ld_R/example_chr21.R_snp.305_335.RDS
inst/extdata/example_ld_R/example_chr21.R_snp.305_335.Rvar
inst/extdata/example_ld_R/example_chr21.R_snp.335_365.RDS
inst/extdata/example_ld_R/example_chr21.R_snp.335_365.Rvar
inst/extdata/example_ld_R/example_chr21.R_snp.35_65.RDS
inst/extdata/example_ld_R/example_chr21.R_snp.35_65.Rvar
inst/extdata/example_ld_R/example_chr21.R_snp.365_395.RDS
inst/extdata/example_ld_R/example_chr21.R_snp.365_395.Rvar
inst/extdata/example_ld_R/example_chr21.R_snp.395_425.RDS
inst/extdata/example_ld_R/example_chr21.R_snp.395_425.Rvar
inst/extdata/example_ld_R/example_chr21.R_snp.425_455.RDS
inst/extdata/example_ld_R/example_chr21.R_snp.425_455.Rvar
inst/extdata/example_ld_R/example_chr21.R_snp.455_485.RDS
inst/extdata/example_ld_R/example_chr21.R_snp.455_485.Rvar
inst/extdata/example_ld_R/example_chr21.R_snp.5_35.RDS
inst/extdata/example_ld_R/example_chr21.R_snp.5_35.Rvar
inst/extdata/example_ld_R/example_chr21.R_snp.65_95.RDS
inst/extdata/example_ld_R/example_chr21.R_snp.65_95.Rvar
inst/extdata/example_ld_R/example_chr21.R_snp.95_125.RDS
inst/extdata/example_ld_R/example_chr21.R_snp.95_125.Rvar
inst/extdata/example_ld_R/example_chr22.R_snp.0_5.RDS
inst/extdata/example_ld_R/example_chr22.R_snp.0_5.Rvar
inst/extdata/example_ld_R/example_chr22.R_snp.125_155.RDS
inst/extdata/example_ld_R/example_chr22.R_snp.125_155.Rvar
inst/extdata/example_ld_R/example_chr22.R_snp.155_185.RDS
inst/extdata/example_ld_R/example_chr22.R_snp.155_185.Rvar
inst/extdata/example_ld_R/example_chr22.R_snp.185_215.RDS
inst/extdata/example_ld_R/example_chr22.R_snp.185_215.Rvar
inst/extdata/example_ld_R/example_chr22.R_snp.215_245.RDS
inst/extdata/example_ld_R/example_chr22.R_snp.215_245.Rvar
inst/extdata/example_ld_R/example_chr22.R_snp.245_275.RDS
inst/extdata/example_ld_R/example_chr22.R_snp.245_275.Rvar
inst/extdata/example_ld_R/example_chr22.R_snp.275_305.RDS
inst/extdata/example_ld_R/example_chr22.R_snp.275_305.Rvar
inst/extdata/example_ld_R/example_chr22.R_snp.305_335.RDS
inst/extdata/example_ld_R/example_chr22.R_snp.305_335.Rvar
inst/extdata/example_ld_R/example_chr22.R_snp.335_365.RDS
inst/extdata/example_ld_R/example_chr22.R_snp.335_365.Rvar
inst/extdata/example_ld_R/example_chr22.R_snp.35_65.RDS
inst/extdata/example_ld_R/example_chr22.R_snp.35_65.Rvar
inst/extdata/example_ld_R/example_chr22.R_snp.365_395.RDS
inst/extdata/example_ld_R/example_chr22.R_snp.365_395.Rvar
inst/extdata/example_ld_R/example_chr22.R_snp.395_425.RDS
inst/extdata/example_ld_R/example_chr22.R_snp.395_425.Rvar
inst/extdata/example_ld_R/example_chr22.R_snp.425_455.RDS
inst/extdata/example_ld_R/example_chr22.R_snp.425_455.Rvar
inst/extdata/example_ld_R/example_chr22.R_snp.455_485.RDS
inst/extdata/example_ld_R/example_chr22.R_snp.455_485.Rvar
inst/extdata/example_ld_R/example_chr22.R_snp.5_35.RDS
inst/extdata/example_ld_R/example_chr22.R_snp.5_35.Rvar
inst/extdata/example_ld_R/example_chr22.R_snp.65_95.RDS
inst/extdata/example_ld_R/example_chr22.R_snp.65_95.Rvar
inst/extdata/example_ld_R/example_chr22.R_snp.95_125.RDS
inst/extdata/example_ld_R/example_chr22.R_snp.95_125.Rvar
inst/extdata/example_ld_R/example_chr3.R_snp.0_5.RDS
inst/extdata/example_ld_R/example_chr3.R_snp.0_5.Rvar
inst/extdata/example_ld_R/example_chr3.R_snp.125_155.RDS
inst/extdata/example_ld_R/example_chr3.R_snp.125_155.Rvar
inst/extdata/example_ld_R/example_chr3.R_snp.155_185.RDS
inst/extdata/example_ld_R/example_chr3.R_snp.155_185.Rvar
inst/extdata/example_ld_R/example_chr3.R_snp.185_215.RDS
inst/extdata/example_ld_R/example_chr3.R_snp.185_215.Rvar
inst/extdata/example_ld_R/example_chr3.R_snp.215_245.RDS
inst/extdata/example_ld_R/example_chr3.R_snp.215_245.Rvar
inst/extdata/example_ld_R/example_chr3.R_snp.245_275.RDS
inst/extdata/example_ld_R/example_chr3.R_snp.245_275.Rvar
inst/extdata/example_ld_R/example_chr3.R_snp.275_305.RDS
inst/extdata/example_ld_R/example_chr3.R_snp.275_305.Rvar
inst/extdata/example_ld_R/example_chr3.R_snp.305_335.RDS
inst/extdata/example_ld_R/example_chr3.R_snp.305_335.Rvar
inst/extdata/example_ld_R/example_chr3.R_snp.335_365.RDS
inst/extdata/example_ld_R/example_chr3.R_snp.335_365.Rvar
inst/extdata/example_ld_R/example_chr3.R_snp.35_65.RDS
inst/extdata/example_ld_R/example_chr3.R_snp.35_65.Rvar
inst/extdata/example_ld_R/example_chr3.R_snp.365_395.RDS
inst/extdata/example_ld_R/example_chr3.R_snp.365_395.Rvar
inst/extdata/example_ld_R/example_chr3.R_snp.395_425.RDS
inst/extdata/example_ld_R/example_chr3.R_snp.395_425.Rvar
inst/extdata/example_ld_R/example_chr3.R_snp.425_455.RDS
inst/extdata/example_ld_R/example_chr3.R_snp.425_455.Rvar
inst/extdata/example_ld_R/example_chr3.R_snp.455_485.RDS
inst/extdata/example_ld_R/example_chr3.R_snp.455_485.Rvar
inst/extdata/example_ld_R/example_chr3.R_snp.5_35.RDS
inst/extdata/example_ld_R/example_chr3.R_snp.5_35.Rvar
inst/extdata/example_ld_R/example_chr3.R_snp.65_95.RDS
inst/extdata/example_ld_R/example_chr3.R_snp.65_95.Rvar
inst/extdata/example_ld_R/example_chr3.R_snp.95_125.RDS
inst/extdata/example_ld_R/example_chr3.R_snp.95_125.Rvar
inst/extdata/example_ld_R/example_chr4.R_snp.0_5.RDS
inst/extdata/example_ld_R/example_chr4.R_snp.0_5.Rvar
inst/extdata/example_ld_R/example_chr4.R_snp.125_155.RDS
inst/extdata/example_ld_R/example_chr4.R_snp.125_155.Rvar
inst/extdata/example_ld_R/example_chr4.R_snp.155_185.RDS
inst/extdata/example_ld_R/example_chr4.R_snp.155_185.Rvar
inst/extdata/example_ld_R/example_chr4.R_snp.185_215.RDS
inst/extdata/example_ld_R/example_chr4.R_snp.185_215.Rvar
inst/extdata/example_ld_R/example_chr4.R_snp.215_245.RDS
inst/extdata/example_ld_R/example_chr4.R_snp.215_245.Rvar
inst/extdata/example_ld_R/example_chr4.R_snp.245_275.RDS
inst/extdata/example_ld_R/example_chr4.R_snp.245_275.Rvar
inst/extdata/example_ld_R/example_chr4.R_snp.275_305.RDS
inst/extdata/example_ld_R/example_chr4.R_snp.275_305.Rvar
inst/extdata/example_ld_R/example_chr4.R_snp.305_335.RDS
inst/extdata/example_ld_R/example_chr4.R_snp.305_335.Rvar
inst/extdata/example_ld_R/example_chr4.R_snp.335_365.RDS
inst/extdata/example_ld_R/example_chr4.R_snp.335_365.Rvar
inst/extdata/example_ld_R/example_chr4.R_snp.35_65.RDS
inst/extdata/example_ld_R/example_chr4.R_snp.35_65.Rvar
inst/extdata/example_ld_R/example_chr4.R_snp.365_395.RDS
inst/extdata/example_ld_R/example_chr4.R_snp.365_395.Rvar
inst/extdata/example_ld_R/example_chr4.R_snp.395_425.RDS
inst/extdata/example_ld_R/example_chr4.R_snp.395_425.Rvar
inst/extdata/example_ld_R/example_chr4.R_snp.425_455.RDS
inst/extdata/example_ld_R/example_chr4.R_snp.425_455.Rvar
inst/extdata/example_ld_R/example_chr4.R_snp.455_485.RDS
inst/extdata/example_ld_R/example_chr4.R_snp.455_485.Rvar
inst/extdata/example_ld_R/example_chr4.R_snp.5_35.RDS
inst/extdata/example_ld_R/example_chr4.R_snp.5_35.Rvar
inst/extdata/example_ld_R/example_chr4.R_snp.65_95.RDS
inst/extdata/example_ld_R/example_chr4.R_snp.65_95.Rvar
inst/extdata/example_ld_R/example_chr4.R_snp.95_125.RDS
inst/extdata/example_ld_R/example_chr4.R_snp.95_125.Rvar
inst/extdata/example_ld_R/example_chr5.R_snp.0_5.RDS
inst/extdata/example_ld_R/example_chr5.R_snp.0_5.Rvar
inst/extdata/example_ld_R/example_chr5.R_snp.125_155.RDS
inst/extdata/example_ld_R/example_chr5.R_snp.125_155.Rvar
inst/extdata/example_ld_R/example_chr5.R_snp.155_185.RDS
inst/extdata/example_ld_R/example_chr5.R_snp.155_185.Rvar
inst/extdata/example_ld_R/example_chr5.R_snp.185_215.RDS
inst/extdata/example_ld_R/example_chr5.R_snp.185_215.Rvar
inst/extdata/example_ld_R/example_chr5.R_snp.215_245.RDS
inst/extdata/example_ld_R/example_chr5.R_snp.215_245.Rvar
inst/extdata/example_ld_R/example_chr5.R_snp.245_275.RDS
inst/extdata/example_ld_R/example_chr5.R_snp.245_275.Rvar
inst/extdata/example_ld_R/example_chr5.R_snp.275_305.RDS
inst/extdata/example_ld_R/example_chr5.R_snp.275_305.Rvar
inst/extdata/example_ld_R/example_chr5.R_snp.305_335.RDS
inst/extdata/example_ld_R/example_chr5.R_snp.305_335.Rvar
inst/extdata/example_ld_R/example_chr5.R_snp.335_365.RDS
inst/extdata/example_ld_R/example_chr5.R_snp.335_365.Rvar
inst/extdata/example_ld_R/example_chr5.R_snp.35_65.RDS
inst/extdata/example_ld_R/example_chr5.R_snp.35_65.Rvar
inst/extdata/example_ld_R/example_chr5.R_snp.365_395.RDS
inst/extdata/example_ld_R/example_chr5.R_snp.365_395.Rvar
inst/extdata/example_ld_R/example_chr5.R_snp.395_425.RDS
inst/extdata/example_ld_R/example_chr5.R_snp.395_425.Rvar
inst/extdata/example_ld_R/example_chr5.R_snp.425_455.RDS
inst/extdata/example_ld_R/example_chr5.R_snp.425_455.Rvar
inst/extdata/example_ld_R/example_chr5.R_snp.455_485.RDS
inst/extdata/example_ld_R/example_chr5.R_snp.455_485.Rvar
inst/extdata/example_ld_R/example_chr5.R_snp.5_35.RDS
inst/extdata/example_ld_R/example_chr5.R_snp.5_35.Rvar
inst/extdata/example_ld_R/example_chr5.R_snp.65_95.RDS
inst/extdata/example_ld_R/example_chr5.R_snp.65_95.Rvar
inst/extdata/example_ld_R/example_chr5.R_snp.95_125.RDS
inst/extdata/example_ld_R/example_chr5.R_snp.95_125.Rvar
inst/extdata/example_ld_R/example_chr6.R_snp.0_5.RDS
inst/extdata/example_ld_R/example_chr6.R_snp.0_5.Rvar
inst/extdata/example_ld_R/example_chr6.R_snp.125_155.RDS
inst/extdata/example_ld_R/example_chr6.R_snp.125_155.Rvar
inst/extdata/example_ld_R/example_chr6.R_snp.155_185.RDS
inst/extdata/example_ld_R/example_chr6.R_snp.155_185.Rvar
inst/extdata/example_ld_R/example_chr6.R_snp.185_215.RDS
inst/extdata/example_ld_R/example_chr6.R_snp.185_215.Rvar
inst/extdata/example_ld_R/example_chr6.R_snp.215_245.RDS
inst/extdata/example_ld_R/example_chr6.R_snp.215_245.Rvar
inst/extdata/example_ld_R/example_chr6.R_snp.245_275.RDS
inst/extdata/example_ld_R/example_chr6.R_snp.245_275.Rvar
inst/extdata/example_ld_R/example_chr6.R_snp.275_305.RDS
inst/extdata/example_ld_R/example_chr6.R_snp.275_305.Rvar
inst/extdata/example_ld_R/example_chr6.R_snp.305_335.RDS
inst/extdata/example_ld_R/example_chr6.R_snp.305_335.Rvar
inst/extdata/example_ld_R/example_chr6.R_snp.335_365.RDS
inst/extdata/example_ld_R/example_chr6.R_snp.335_365.Rvar
inst/extdata/example_ld_R/example_chr6.R_snp.35_65.RDS
inst/extdata/example_ld_R/example_chr6.R_snp.35_65.Rvar
inst/extdata/example_ld_R/example_chr6.R_snp.365_395.RDS
inst/extdata/example_ld_R/example_chr6.R_snp.365_395.Rvar
inst/extdata/example_ld_R/example_chr6.R_snp.395_425.RDS
inst/extdata/example_ld_R/example_chr6.R_snp.395_425.Rvar
inst/extdata/example_ld_R/example_chr6.R_snp.425_455.RDS
inst/extdata/example_ld_R/example_chr6.R_snp.425_455.Rvar
inst/extdata/example_ld_R/example_chr6.R_snp.455_485.RDS
inst/extdata/example_ld_R/example_chr6.R_snp.455_485.Rvar
inst/extdata/example_ld_R/example_chr6.R_snp.5_35.RDS
inst/extdata/example_ld_R/example_chr6.R_snp.5_35.Rvar
inst/extdata/example_ld_R/example_chr6.R_snp.65_95.RDS
inst/extdata/example_ld_R/example_chr6.R_snp.65_95.Rvar
inst/extdata/example_ld_R/example_chr6.R_snp.95_125.RDS
inst/extdata/example_ld_R/example_chr6.R_snp.95_125.Rvar
inst/extdata/example_ld_R/example_chr7.R_snp.0_5.RDS
inst/extdata/example_ld_R/example_chr7.R_snp.0_5.Rvar
inst/extdata/example_ld_R/example_chr7.R_snp.125_155.RDS
inst/extdata/example_ld_R/example_chr7.R_snp.125_155.Rvar
inst/extdata/example_ld_R/example_chr7.R_snp.155_185.RDS
inst/extdata/example_ld_R/example_chr7.R_snp.155_185.Rvar
inst/extdata/example_ld_R/example_chr7.R_snp.185_215.RDS
inst/extdata/example_ld_R/example_chr7.R_snp.185_215.Rvar
inst/extdata/example_ld_R/example_chr7.R_snp.215_245.RDS
inst/extdata/example_ld_R/example_chr7.R_snp.215_245.Rvar
inst/extdata/example_ld_R/example_chr7.R_snp.245_275.RDS
inst/extdata/example_ld_R/example_chr7.R_snp.245_275.Rvar
inst/extdata/example_ld_R/example_chr7.R_snp.275_305.RDS
inst/extdata/example_ld_R/example_chr7.R_snp.275_305.Rvar
inst/extdata/example_ld_R/example_chr7.R_snp.305_335.RDS
inst/extdata/example_ld_R/example_chr7.R_snp.305_335.Rvar
inst/extdata/example_ld_R/example_chr7.R_snp.335_365.RDS
inst/extdata/example_ld_R/example_chr7.R_snp.335_365.Rvar
inst/extdata/example_ld_R/example_chr7.R_snp.35_65.RDS
inst/extdata/example_ld_R/example_chr7.R_snp.35_65.Rvar
inst/extdata/example_ld_R/example_chr7.R_snp.365_395.RDS
inst/extdata/example_ld_R/example_chr7.R_snp.365_395.Rvar
inst/extdata/example_ld_R/example_chr7.R_snp.395_425.RDS
inst/extdata/example_ld_R/example_chr7.R_snp.395_425.Rvar
inst/extdata/example_ld_R/example_chr7.R_snp.425_455.RDS
inst/extdata/example_ld_R/example_chr7.R_snp.425_455.Rvar
inst/extdata/example_ld_R/example_chr7.R_snp.455_485.RDS
inst/extdata/example_ld_R/example_chr7.R_snp.455_485.Rvar
inst/extdata/example_ld_R/example_chr7.R_snp.5_35.RDS
inst/extdata/example_ld_R/example_chr7.R_snp.5_35.Rvar
inst/extdata/example_ld_R/example_chr7.R_snp.65_95.RDS
inst/extdata/example_ld_R/example_chr7.R_snp.65_95.Rvar
inst/extdata/example_ld_R/example_chr7.R_snp.95_125.RDS
inst/extdata/example_ld_R/example_chr7.R_snp.95_125.Rvar
inst/extdata/example_ld_R/example_chr8.R_snp.0_5.RDS
inst/extdata/example_ld_R/example_chr8.R_snp.0_5.Rvar
inst/extdata/example_ld_R/example_chr8.R_snp.125_155.RDS
inst/extdata/example_ld_R/example_chr8.R_snp.125_155.Rvar
inst/extdata/example_ld_R/example_chr8.R_snp.155_185.RDS
inst/extdata/example_ld_R/example_chr8.R_snp.155_185.Rvar
inst/extdata/example_ld_R/example_chr8.R_snp.185_215.RDS
inst/extdata/example_ld_R/example_chr8.R_snp.185_215.Rvar
inst/extdata/example_ld_R/example_chr8.R_snp.215_245.RDS
inst/extdata/example_ld_R/example_chr8.R_snp.215_245.Rvar
inst/extdata/example_ld_R/example_chr8.R_snp.245_275.RDS
inst/extdata/example_ld_R/example_chr8.R_snp.245_275.Rvar
inst/extdata/example_ld_R/example_chr8.R_snp.275_305.RDS
inst/extdata/example_ld_R/example_chr8.R_snp.275_305.Rvar
inst/extdata/example_ld_R/example_chr8.R_snp.305_335.RDS
inst/extdata/example_ld_R/example_chr8.R_snp.305_335.Rvar
inst/extdata/example_ld_R/example_chr8.R_snp.335_365.RDS
inst/extdata/example_ld_R/example_chr8.R_snp.335_365.Rvar
inst/extdata/example_ld_R/example_chr8.R_snp.35_65.RDS
inst/extdata/example_ld_R/example_chr8.R_snp.35_65.Rvar
inst/extdata/example_ld_R/example_chr8.R_snp.365_395.RDS
inst/extdata/example_ld_R/example_chr8.R_snp.365_395.Rvar
inst/extdata/example_ld_R/example_chr8.R_snp.395_425.RDS
inst/extdata/example_ld_R/example_chr8.R_snp.395_425.Rvar
inst/extdata/example_ld_R/example_chr8.R_snp.425_455.RDS
inst/extdata/example_ld_R/example_chr8.R_snp.425_455.Rvar
inst/extdata/example_ld_R/example_chr8.R_snp.455_485.RDS
inst/extdata/example_ld_R/example_chr8.R_snp.455_485.Rvar
inst/extdata/example_ld_R/example_chr8.R_snp.5_35.RDS
inst/extdata/example_ld_R/example_chr8.R_snp.5_35.Rvar
inst/extdata/example_ld_R/example_chr8.R_snp.65_95.RDS
inst/extdata/example_ld_R/example_chr8.R_snp.65_95.Rvar
inst/extdata/example_ld_R/example_chr8.R_snp.95_125.RDS
inst/extdata/example_ld_R/example_chr8.R_snp.95_125.Rvar
inst/extdata/example_ld_R/example_chr9.R_snp.0_5.RDS
inst/extdata/example_ld_R/example_chr9.R_snp.0_5.Rvar
inst/extdata/example_ld_R/example_chr9.R_snp.125_155.RDS
inst/extdata/example_ld_R/example_chr9.R_snp.125_155.Rvar
inst/extdata/example_ld_R/example_chr9.R_snp.155_185.RDS
inst/extdata/example_ld_R/example_chr9.R_snp.155_185.Rvar
inst/extdata/example_ld_R/example_chr9.R_snp.185_215.RDS
inst/extdata/example_ld_R/example_chr9.R_snp.185_215.Rvar
inst/extdata/example_ld_R/example_chr9.R_snp.215_245.RDS
inst/extdata/example_ld_R/example_chr9.R_snp.215_245.Rvar
inst/extdata/example_ld_R/example_chr9.R_snp.245_275.RDS
inst/extdata/example_ld_R/example_chr9.R_snp.245_275.Rvar
inst/extdata/example_ld_R/example_chr9.R_snp.275_305.RDS
inst/extdata/example_ld_R/example_chr9.R_snp.275_305.Rvar
inst/extdata/example_ld_R/example_chr9.R_snp.305_335.RDS
inst/extdata/example_ld_R/example_chr9.R_snp.305_335.Rvar
inst/extdata/example_ld_R/example_chr9.R_snp.335_365.RDS
inst/extdata/example_ld_R/example_chr9.R_snp.335_365.Rvar
inst/extdata/example_ld_R/example_chr9.R_snp.35_65.RDS
inst/extdata/example_ld_R/example_chr9.R_snp.35_65.Rvar
inst/extdata/example_ld_R/example_chr9.R_snp.365_395.RDS
inst/extdata/example_ld_R/example_chr9.R_snp.365_395.Rvar
inst/extdata/example_ld_R/example_chr9.R_snp.395_425.RDS
inst/extdata/example_ld_R/example_chr9.R_snp.395_425.Rvar
inst/extdata/example_ld_R/example_chr9.R_snp.425_455.RDS
inst/extdata/example_ld_R/example_chr9.R_snp.425_455.Rvar
inst/extdata/example_ld_R/example_chr9.R_snp.455_485.RDS
inst/extdata/example_ld_R/example_chr9.R_snp.455_485.Rvar
inst/extdata/example_ld_R/example_chr9.R_snp.5_35.RDS
inst/extdata/example_ld_R/example_chr9.R_snp.5_35.Rvar
inst/extdata/example_ld_R/example_chr9.R_snp.65_95.RDS
inst/extdata/example_ld_R/example_chr9.R_snp.65_95.Rvar
inst/extdata/example_ld_R/example_chr9.R_snp.95_125.RDS
inst/extdata/example_ld_R/example_chr9.R_snp.95_125.Rvar
inst/extdata/example_regions.bed
inst/extdata/example_tissue.db
inst/extdata/ld_matrices/example_locus_chr16.R_snp.71020125_72901251.RDS
inst/extdata/ld_matrices/example_locus_chr16.R_snp.71020125_72901251.Rvar
inst/extdata/ldetect/AFR.b37.bed
inst/extdata/ldetect/AFR.b38.bed
inst/extdata/ldetect/ASN.b37.bed
inst/extdata/ldetect/ASN.b38.bed
inst/extdata/ldetect/EUR.b37.bed
inst/extdata/ldetect/EUR.b38.bed
inst/extdata/scripts/convert_geno_to_LD_matrix_1KG_EUR_b37.R
inst/extdata/scripts/convert_geno_to_LD_matrix_UKB_b37.R
inst/extdata/scripts/convert_geno_to_LD_matrix_UKB_b38.R
inst/extdata/summary_stats/ukb-d-30780_irnt_subset.RDS
inst/extdata/weights_nolnc/mashr_Liver_nolnc_subset.db
inst/extdata/weights_nolnc/mashr_Liver_nolnc_subset.txt.gz
man/anno_susie.Rd
man/coef.susie.Rd
man/compute_ss.Rd
man/convert_geno_to_LD_matrix.Rd
man/ctwas.Rd
man/ctwas_locus_plot.Rd
man/ctwas_locus_plot_genetrack.Rd
man/ctwas_rss.Rd
man/ctwas_summarize_parameters.Rd
man/filter_regions.Rd
man/get_cs_correlation.Rd
man/harmonize_wgt_ld.Rd
man/harmonize_z_ld.Rd
man/impute_expr.Rd
man/impute_expr_z.Rd
man/index_regions.Rd
man/predict.susie.Rd
man/preharmonize_z_ld.Rd
man/prep_exprvar.Rd
man/prep_pgen.Rd
man/prep_pvar.Rd
man/read_bim.Rd
man/read_expr.Rd
man/read_exprvar.Rd
man/read_ld_Rvar.Rd
man/read_ld_Rvar_RDS.Rd
man/read_pgen.Rd
man/read_pvar.Rd
man/read_var_info.Rd
man/region2core.Rd
man/single_effect_regression.Rd
man/susie.Rd
man/susieI.Rd
man/susieI_rss.Rd
man/susie_get_methods.Rd
man/susie_init_coef.Rd
man/susie_rss.Rd
man/univariate_regression.Rd
man/write_ld_Rf.Rd
vignettes/ctwas_summary_statistics.Rmd
vignettes/harmonization.Rmd
vignettes/regionmerging.Rmd
vignettes/workflow.png
workflow.png
