Man pages for simrvprojects/SimRVPedigree
Simulate Pedigrees Ascertained for a Rare Disease
| AgeSpecific_Hazards | Age-specific hazard rate dataset |
| ascertain_ped | Determine if a pedigree is ascertained |
| ascertainTrim_ped | Check to see if a trimmed pedigree is ascertained. |
| assign_gen | Assign generation number based on oldest founder |
| censor_ped | Censor pedigree data |
| check_ped | Checks ped_file for expected information, used before... |
| choose_proband | Choose a proband from the disease-affected relatives in a... |
| create_founder | Create a new seed founder |
| create_mate | Create a new mate |
| create_offspring | Create a new offspring |
| create_pedFile | Create an empty pedigree |
| disqualify_ped | Initial checks to disqualify a pedigree from ascertainment. |
| EgPeds | Example pedigrees |
| events | Constructor function for an object of class events |
| find_available_parent | Find available parent |
| find_missing_parent | Find parents that have been removed but are required for... |
| find_mrca | Find the most recent common ancestor of two pedigree members |
| get_affectedInfo | Gather information for the affected relatives |
| get_famInfo | Obtain summary information |
| get_gen_labs | Get generation lables |
| get_ind_data | Get individual data for sim_pop function |
| get_kinship | Compute kinship matrix for the affected relatives |
| get_nextEvent | Simulate the next life event |
| get_onsetHazard | Calculate the onset hazard for an individual |
| get_wait_prob | Obtain the cumulative probability of the waiting time to the... |
| get_wait_time | obtain the waiting time to the next event |
| hazard | Create an object of class hazard. |
| is.events | Check to see if object is of class ped |
| is.hazard | Check to see if object is of class hazard |
| is.ped | Check to see if object is of class ped |
| new.ped | Create an object of class ped. |
| ped | Constructor function for an object of class ped |
| ped2pedigree | Create a kinship2 pedigree structure from an object of class... |
| pedigreeLabels | Create pedigree labels |
| plot.ped | Plot pedigree |
| reassign_gen | Reassign generation number based on affected status |
| sim_founderRVstatus | Determine founder genotype at the disease locus and determime... |
| sim_life | Simulate all life events |
| sim_nFam | Simulate a nuclear family from a single founder |
| sim_ped | Simulate a pedigree |
| sim_pop | Simulate survival data for a population sample |
| sim_RVped | Simulate a pedigree ascertained to contain multiple... |
| SimRVPedigree | Simulate pedigrees ascertained for disease status |
| SubtypeHazards | Age-specific hazard rate dataset with subtypes |
| summary.ped | Summarize a sample of pedigrees |
| trim_ped | Trim pedigree based on proband recall |
