pandaModif: run PANDA (calculate geneCoreg, regNet and co-operative...
In singha53/amritr: Accessory Functions Used by Amrit Singh
Description
run PANDA (calculate geneCoreg, regNet and co-operative matrices)
Usage
1
2
pandaModif(motif, expr = NULL, ppi = NULL, alpha = 0.1,
hamming = 0.01, iter = NA)
Arguments
motif
3 column matrix, 1st column (regVar), 2nd column (gene), 3rd (weight)
geneExp
nxp matrix (gene by sample)
regulatory
expression (regVar by sample)
phenotype
factor specifiying the group of each sample
singha53/amritr documentation built on July 21, 2019, 3:46 p.m.
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Description
run PANDA (calculate geneCoreg, regNet and co-operative matrices)
Usage
1 2 | pandaModif(motif, expr = NULL, ppi = NULL, alpha = 0.1,
hamming = 0.01, iter = NA)
|
Arguments
motif |
3 column matrix, 1st column (regVar), 2nd column (gene), 3rd (weight) |
geneExp |
nxp matrix (gene by sample) |
regulatory |
expression (regVar by sample) |
phenotype |
factor specifiying the group of each sample |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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