Files in singha53/amritr
Accessory Functions Used by Amrit Singh

.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/biomarkerPipeline.R R/classificationPerf.R R/dingo.R R/functions.R R/geneset_analysis.R R/networkFunctions.R R/panda_functions.R R/panel.cor.R R/pcaFunctions.R R/summaryFunctions.R R/supportFunc_cibersort.R R/supportFunc_diablo.R R/supportFunc_enet.R R/supportFunc_ensemble.splsda.R R/supportFunc_ensembleEnet.R R/supportFunc_ensembleRf.R R/supportFunc_ensembleSvm.R R/supportFunc_ggplot2.R R/supportFunc_glm.R R/supportFunc_lm.R R/supportFunc_nanoString.R R/supportFunc_rf.R R/supportFunc_splsda.R R/supportFunc_svm.R R/vennDiagram.R README.Rmd
README.html
README.md
README_cache/html/__packages
README_cache/html/biomarkerPipeline_0d1dffe1bc7d083e748c72e9c0f4dc0f.RData
README_cache/html/biomarkerPipeline_0d1dffe1bc7d083e748c72e9c0f4dc0f.rdb
README_cache/html/biomarkerPipeline_0d1dffe1bc7d083e748c72e9c0f4dc0f.rdx
README_cache/html/load libraries_d41c3947125508a59277477658c0bcc7.RData
README_cache/html/load libraries_d41c3947125508a59277477658c0bcc7.rdb
README_cache/html/load libraries_d41c3947125508a59277477658c0bcc7.rdx
README_cache/html/loadLibraries_a444980403cd0fe8e5be1aec766f5c6e.RData
README_cache/html/loadLibraries_a444980403cd0fe8e5be1aec766f5c6e.rdb
README_cache/html/loadLibraries_a444980403cd0fe8e5be1aec766f5c6e.rdx
README_cache/html/unnamed-chunk-1_f86e98dc3788a9b6b421acebef69da36.RData
README_cache/html/unnamed-chunk-1_f86e98dc3788a9b6b421acebef69da36.rdb
README_cache/html/unnamed-chunk-1_f86e98dc3788a9b6b421acebef69da36.rdx
README_cache/html/unnamed-chunk-2_7b71c4fa37c6638fc6e3b1ef07f34b5a.RData
README_cache/html/unnamed-chunk-2_7b71c4fa37c6638fc6e3b1ef07f34b5a.rdb
README_cache/html/unnamed-chunk-2_7b71c4fa37c6638fc6e3b1ef07f34b5a.rdx
README_cache/html/unnamed-chunk-3_b140f461e302edafbe39ddfcc7b2c266.RData
README_cache/html/unnamed-chunk-3_b140f461e302edafbe39ddfcc7b2c266.rdb
README_cache/html/unnamed-chunk-3_b140f461e302edafbe39ddfcc7b2c266.rdx
README_cache/html/unnamed-chunk-4_2744748e01b130e2bde4eb7482e0ea68.RData
README_cache/html/unnamed-chunk-4_2744748e01b130e2bde4eb7482e0ea68.rdb
README_cache/html/unnamed-chunk-4_2744748e01b130e2bde4eb7482e0ea68.rdx
README_cache/html/unnamed-chunk-5_30c113d5726ede88dfb989b174ce0dfb.RData
README_cache/html/unnamed-chunk-5_30c113d5726ede88dfb989b174ce0dfb.rdb
README_cache/html/unnamed-chunk-5_30c113d5726ede88dfb989b174ce0dfb.rdx
README_cache/html/unnamed-chunk-6_2bd62b1e21aebec7abbbb4e79c9f5045.RData
README_cache/html/unnamed-chunk-6_2bd62b1e21aebec7abbbb4e79c9f5045.rdb
README_cache/html/unnamed-chunk-6_2bd62b1e21aebec7abbbb4e79c9f5045.rdx
README_files/figure-html/biomarkerPipeline-1.png
README_files/figure-html/unnamed-chunk-1-1.png
README_files/figure-html/unnamed-chunk-2-1.png
README_files/figure-html/unnamed-chunk-6-1.png
Rplots.pdf
amritr.Rproj
data/.DS_Store
data/lincs1000_chemPert.rda
data/lm22.rda
data/pathways.rda
man/CIBERSORT.Rd man/CoreAlg.Rd man/Intersect.Rd man/Setdiff.Rd man/Union.Rd man/annotateTranscripts.Rd man/biomarkerPipeline.Rd man/calculateDiff.Rd man/colSds.Rd man/colVars.Rd man/compVar.Rd man/createFolds.Rd man/customTheme.Rd man/descriptiveStat.Rd man/doPerm.Rd man/enet.Rd man/enetCV.Rd man/ensemble.splsda.Rd man/ensemble.splsdaCV.Rd man/ensembleEnet.Rd man/ensembleEnetCV.Rd man/ensembleRf.Rd man/ensembleRfCV.Rd man/ensembleSvm.Rd man/ensembleSvmCV.Rd man/extendedBIC.Rd man/extractErr.Rd man/fast.dingo.Rd man/fast.scoring.boot.Rd man/gene_set_analysis.Rd man/glmCV.Rd man/glmPanel.Rd man/graphIndices.Rd man/hypothesisTests.Rd man/integrativePanels.Rd man/lm_singlePredictor.Rd man/lme_interactionBinaryCont.Rd man/multiplot.Rd man/networkStats.Rd man/normalizeNetwork.Rd man/normalizelibSum.Rd man/pandaModif.Rd man/pandax.Rd man/pandaxBoot.Rd man/panel.cor.Rd man/perf.enet.Rd man/perf.ensembleEnet.Rd man/perf.ensembleRf.Rd man/perf.glm.Rd man/perf.rf.Rd man/perf.sPLSDA.Rd man/perf.svm.Rd man/perf.tuned.sPLSDA.Rd man/perfEnsemble.splsda.Rd man/perfEnsembleSvm.Rd man/plotSampleHist.Rd man/rccToDat.Rd man/rfCV.Rd man/rforest.Rd man/rowSds.Rd man/rowVars.Rd man/sPLSDA.Rd man/sPLSDACV.Rd man/setDesign.Rd man/splitData.Rd man/supportVectorMachine.Rd man/svmCV.Rd man/tanimoto.Rd man/tperformance.Rd man/tuned.sPLSDA.Rd man/tuned.sPLSDACV.Rd man/update.diagonal.Rd man/vennDual.Rd man/vennQuad.Rd man/vennTriple.Rd man/venndiagram.Rd man/zip_nPure.Rd
singha53/amritr documentation built on Nov. 19, 2017, 3:38 a.m.