Files in singha53/amritr
Accessory Functions Used by Amrit Singh
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/biomarkerPipeline.R
R/classificationPerf.R
R/dingo.R
R/functions.R
R/geneset_analysis.R
R/networkFunctions.R
R/panda_functions.R
R/panel.cor.R
R/pcaFunctions.R
R/summaryFunctions.R
R/supportFunc_cibersort.R
R/supportFunc_diablo.R
R/supportFunc_enet.R
R/supportFunc_ensemble.splsda.R
R/supportFunc_ensembleEnet.R
R/supportFunc_ensembleRf.R
R/supportFunc_ensembleSvm.R
R/supportFunc_ggplot2.R
R/supportFunc_glm.R
R/supportFunc_lm.R
R/supportFunc_nanoString.R
R/supportFunc_rf.R
R/supportFunc_splsda.R
R/supportFunc_svm.R
R/vennDiagram.R
README.Rmd
README.html
README.md
README_cache/.DS_Store
README_cache/html/__packages
README_cache/html/biomarkerPipeline_0d1dffe1bc7d083e748c72e9c0f4dc0f.RData
README_cache/html/biomarkerPipeline_0d1dffe1bc7d083e748c72e9c0f4dc0f.rdb
README_cache/html/biomarkerPipeline_0d1dffe1bc7d083e748c72e9c0f4dc0f.rdx
README_cache/html/load libraries_d41c3947125508a59277477658c0bcc7.RData
README_cache/html/load libraries_d41c3947125508a59277477658c0bcc7.rdb
README_cache/html/load libraries_d41c3947125508a59277477658c0bcc7.rdx
README_cache/html/loadLibraries_a444980403cd0fe8e5be1aec766f5c6e.RData
README_cache/html/loadLibraries_a444980403cd0fe8e5be1aec766f5c6e.rdb
README_cache/html/loadLibraries_a444980403cd0fe8e5be1aec766f5c6e.rdx
README_cache/html/unnamed-chunk-1_f86e98dc3788a9b6b421acebef69da36.RData
README_cache/html/unnamed-chunk-1_f86e98dc3788a9b6b421acebef69da36.rdb
README_cache/html/unnamed-chunk-1_f86e98dc3788a9b6b421acebef69da36.rdx
README_cache/html/unnamed-chunk-2_7b71c4fa37c6638fc6e3b1ef07f34b5a.RData
README_cache/html/unnamed-chunk-2_7b71c4fa37c6638fc6e3b1ef07f34b5a.rdb
README_cache/html/unnamed-chunk-2_7b71c4fa37c6638fc6e3b1ef07f34b5a.rdx
README_cache/html/unnamed-chunk-3_b140f461e302edafbe39ddfcc7b2c266.RData
README_cache/html/unnamed-chunk-3_b140f461e302edafbe39ddfcc7b2c266.rdb
README_cache/html/unnamed-chunk-3_b140f461e302edafbe39ddfcc7b2c266.rdx
README_cache/html/unnamed-chunk-4_2744748e01b130e2bde4eb7482e0ea68.RData
README_cache/html/unnamed-chunk-4_2744748e01b130e2bde4eb7482e0ea68.rdb
README_cache/html/unnamed-chunk-4_2744748e01b130e2bde4eb7482e0ea68.rdx
README_cache/html/unnamed-chunk-5_30c113d5726ede88dfb989b174ce0dfb.RData
README_cache/html/unnamed-chunk-5_30c113d5726ede88dfb989b174ce0dfb.rdb
README_cache/html/unnamed-chunk-5_30c113d5726ede88dfb989b174ce0dfb.rdx
README_cache/html/unnamed-chunk-6_2bd62b1e21aebec7abbbb4e79c9f5045.RData
README_cache/html/unnamed-chunk-6_2bd62b1e21aebec7abbbb4e79c9f5045.rdb
README_cache/html/unnamed-chunk-6_2bd62b1e21aebec7abbbb4e79c9f5045.rdx
README_files/.DS_Store
README_files/figure-html/biomarkerPipeline-1.png
README_files/figure-html/unnamed-chunk-1-1.png
README_files/figure-html/unnamed-chunk-2-1.png
README_files/figure-html/unnamed-chunk-6-1.png
Rplots.pdf
amritr.Rproj
data/.DS_Store
data/lincs1000_chemPert.rda
data/lm22.rda
data/pathways.rda
man/CIBERSORT.Rd
man/CoreAlg.Rd
man/Intersect.Rd
man/Setdiff.Rd
man/Union.Rd
man/annotateTranscripts.Rd
man/biomarkerPipeline.Rd
man/calculateDiff.Rd
man/colSds.Rd
man/colVars.Rd
man/compVar.Rd
man/createFolds.Rd
man/customTheme.Rd
man/descriptiveStat.Rd
man/doPerm.Rd
man/enet.Rd
man/enetCV.Rd
man/ensemble.splsda.Rd
man/ensemble.splsdaCV.Rd
man/ensembleEnet.Rd
man/ensembleEnetCV.Rd
man/ensembleRf.Rd
man/ensembleRfCV.Rd
man/ensembleSvm.Rd
man/ensembleSvmCV.Rd
man/extendedBIC.Rd
man/extractErr.Rd
man/fast.dingo.Rd
man/fast.scoring.boot.Rd
man/gene_set_analysis.Rd
man/glmCV.Rd
man/glmPanel.Rd
man/graphIndices.Rd
man/hypothesisTests.Rd
man/integrativePanels.Rd
man/lm_singlePredictor.Rd
man/lme_interactionBinaryCont.Rd
man/multiplot.Rd
man/networkStats.Rd
man/normalizeNetwork.Rd
man/normalizelibSum.Rd
man/pandaModif.Rd
man/pandax.Rd
man/pandaxBoot.Rd
man/panel.cor.Rd
man/perf.enet.Rd
man/perf.ensembleEnet.Rd
man/perf.ensembleRf.Rd
man/perf.glm.Rd
man/perf.rf.Rd
man/perf.sPLSDA.Rd
man/perf.svm.Rd
man/perf.tuned.sPLSDA.Rd
man/perfEnsemble.splsda.Rd
man/perfEnsembleSvm.Rd
man/plotSampleHist.Rd
man/rccToDat.Rd
man/rfCV.Rd
man/rforest.Rd
man/rowSds.Rd
man/rowVars.Rd
man/sPLSDA.Rd
man/sPLSDACV.Rd
man/setDesign.Rd
man/splitData.Rd
man/supportVectorMachine.Rd
man/svmCV.Rd
man/tanimoto.Rd
man/tperformance.Rd
man/tuned.sPLSDA.Rd
man/tuned.sPLSDACV.Rd
man/update.diagonal.Rd
man/vennDual.Rd
man/vennQuad.Rd
man/vennTriple.Rd
man/venndiagram.Rd
man/zip_nPure.Rd
