targetedGenes: targetedGenes
In singha53/pandaR: PANDA Algorithm

Description Usage Arguments Value Examples

Gets a set of genes targeted by a specified transcription factor. This function can be applied to a graph that is not complete, subsetting the edges which have non-zero edge weight. See function topEdges for dichotomizing edgeweights.

1	targetedGenes(x, tfs)

`x`	an object of class "panda"
`tfs`	transcription factors to query

A vector of targeted genes

data(pandaToyData)
pandaRes <- panda(pandaToyData$motif,
           pandaToyData$expression,pandaToyData$ppi,hamming=.001)
topPandaRes <- topedges(pandaRes,1000)
targetedGenes(topPandaRes,c("AR","ELK1"))

data(pandaResult)
topPandaRes <- topedges(pandaResult,1000)