lcms_convert_ipo_to_xcms: Converts IPO parameters to XCMS format

In sipss/NIHSlcms: Signal processing of LC-MS metabolomics

Description

The function converts from IPO to XCMS variable formats: The variable names in IPO and XCMS presented some mismatches, thus the function lcms_convert_ipo_to_xcms was created to achieve compatibility between packages when these parameters are stored in a list.

Usage

lcms_convert_ipo_to_xcms(params)

Arguments

params

A list with the IPO parameters, generated with the lcms_write_opt_params function.

Value

Parameters in XCMS format

See Also

Other optimization functions: default_peakpicking_params(), lcms_read_ipo_to_xcms(), lcms_retcorgroup_optimization(), lcms_write_opt_params(), peakpicking_optimization()

Other import/export functions: lcms_dataset_load(), lcms_dataset_save(), lcms_identify_metabolites(), lcms_meta_export(), lcms_meta_read(), lcms_peak_annotation(), lcms_raw_data(), lcms_read_ipo_to_xcms(), lcms_read_samples(), lcms_rearrange_datafiles_by_class(), lcms_sig_peaks_table(), lcms_spectral_sig_features(), lcms_to_mait(), lcms_write_opt_params(), lcms_write_parameter_table(), phData()

Examples

## Not run: 
opt_result_path <-  system.file("extdata","ipo_opt", "params.rds", package = "AlpsLCMS")
params <- base::readRDS(opt_result_path)
preproc_params <- lcms_convert_ipo_to_xcms(params)
print(preproc_params)

## End(Not run)

sipss/NIHSlcms documentation built on May 13, 2021, 6:19 p.m.