lcms_raw_data: Raw data extractor from a MAIT object

In sipss/NIHSlcms: Signal processing of LC-MS metabolomics

Description

Function lcms_raw_data extracts the raw data used to build the MAIT-class object.

Usage

lcms_raw_data(MAIT.object)

Arguments

MAIT.object

A MAIT-class object.

Value

A list containing either a xcmsSet or a xsAnnotate object.

See Also

Other metabolite identification functions: lcms_identify_metabolites(), lcms_peak_annotation(), lcms_peak_table_boxplots(), lcms_peak_table_pca(), lcms_sig_peaks_table(), lcms_spectral_sig_features(), lcms_to_mait(), lcms_write_parameter_table()

Other dataset_peak_table functions: lcms_dataset_load(), lcms_identify_metabolites(), lcms_peak_annotation(), lcms_peak_table_boxplots(), lcms_peak_table_pca(), lcms_plot_tics(), lcms_sig_peaks_table(), lcms_spectral_sig_features(), lcms_tics(), lcms_to_mait()

Other import/export functions: lcms_convert_ipo_to_xcms(), lcms_dataset_load(), lcms_dataset_save(), lcms_identify_metabolites(), lcms_meta_export(), lcms_meta_read(), lcms_peak_annotation(), lcms_read_ipo_to_xcms(), lcms_read_samples(), lcms_rearrange_datafiles_by_class(), lcms_sig_peaks_table(), lcms_spectral_sig_features(), lcms_to_mait(), lcms_write_opt_params(), lcms_write_parameter_table(), phData()

Examples

## Not run: 
file_name <-  system.file("extdata", "peak_table_mait.rds", package = "AlpsLCMS")
peak_table <- base::readRDS(file_name)
peak_table_ann <- lcms_peak_annotation(MAIT.object = peak_table)

lcms_raw_data(peak_table_ann)

## End(Not run)

sipss/NIHSlcms documentation built on May 13, 2021, 6:19 p.m.