Man pages for sizespectrum/mizerExperimental
Extends the mizer package with experimental features
| abundanceControl | Controlling egg abundance in the tuning gadget |
| abundanceTab | Abundance tab for tuning gadget |
| adjustBackgroundSpecies | Retunes abundance of background species. |
| alignResource | Rescale resource to be in line with fish community |
| biomassTab | Biomass tab for tuning gadget |
| catchTab | Serve tab with catch data |
| deathTab | Serve tab with death plots |
| dietTab | Serve tab with diet plot |
| distanceSSLogYield | Measure distance between current and previous state in terms... |
| fishingControl | Controlling the fishing parameters in the tuning gadget |
| getYieldVsF | Calculate a yield-vs-F curve |
| growthControl | A single slider that adjusts both 'h' and 'gamma' |
| growthTab | Growth tab for tuning gadget inheritParams biomassTab |
| interactionControl | Controlling the interaction matrix in the tuning gadget |
| markBackground | Designate species as background species |
| mizerExperimental-package | mizerExperimental: Extends the mizer package with... |
| numberTab | Number tab for tuning gadget |
| otherControl | Controlling the species parameters not included in other... |
| plotBiomassRelative | Plot change in biomass over time |
| plotBiomassVsSpecies | Plot the biomass against species |
| plotDeath | Plot the sources of external, predation and fishing mortality... |
| plotEnergyBudget | Plot the energy budget of each species through size. |
| plotNumberVsSpecies | Plot the number against species |
| plotResourceLevel | Plot the proportion of the resource spectrum(s) compared to... |
| plotResourcePred | Plot the mortality applied on the resource spectrum(s) |
| plotSpectra2 | Show two size spectra in the same plot |
| plotSpectraRelative | Plot the relative difference between two spectra |
| plotYieldRelative | Plot change in yield over time |
| plotYieldVsF | Plot a yield-vs-F curve |
| plotYieldVsSize | Plot the size distribution of the catch |
| plotYieldVsSpecies | Plot the yield against species |
| predationControl | Controlling the predation parameters in the tuning gadget |
| pruneSpecies | Removes species with abundance below a threshold |
| ratesTab | Serve tab with rates plots |
| removeBackgroundSpecies | Remove all background species |
| reproductionControl | Controlling the reproduction parameters in the tuning gadget |
| reproTab | Serve tab with plot of reproductive success rates |
| resourceControl | Controlling the resource parameters in the tuning gadget |
| resourceTab | Serve tab with resource plots |
| scaleAbundance | Rescale Abundance |
| scaleDownBackground | Scale background down by a factor |
| singleSpeciesSteady | Set initial abundances to single-species steady state... |
| spectraTab | tuneParams tab showing size spectra |
| stomachTab | Serve tab with stomach data |
| tuneGrowth | Tune Growth |
| tuneParams | Launch shiny gadget for tuning parameters |
| updateInitialValues | Update the initial values |
| validSim | Returns a valid simulation by removing non-finite results |
| yieldCalculator | Calculates yield from steady sim |
