plotEnergyBudget: Plot the energy budget of each species through size.

In sizespectrum/mizerExperimental: Extends the mizer package with experimental features

Plot the energy budget of each species through size.

Description

This budget is divided between growth, income, metabolic loss and reproduction.

Usage

plotEnergyBudget(
  object,
  species = NULL,
  logarithmic = TRUE,
  return_data = FALSE
)

plotlyEnergyBudget(object, species = NULL, logarithmic = TRUE, ...)

Arguments

object	An object of class MizerSim or MizerParams.
species	The name of the predator species for which to plot the mortality.
logarithmic	A boolean value that determines whether values should be displayed logarithmicly or linearly. Default is TRUE.
return_data	A boolean value that determines whether the formatted data used for the plot is returned instead of the plot itself. Default value is FALSE
...	Other arguments (currently unused)

Value

A ggplot2 object, unless return_data = TRUE, in which case a list composed of two slots is returned. First slot is a data frame with the four variables 'w', 'value', 'Type', 'Species and the second slot is a data frame with the five variables 'w_mat', 'w_max', 'Species', 'y_coord', 'Type' (to plot vertical lines).

See Also

plotting_functions

Other plotting functions: plotDeath(), plotResourceLevel(), plotResourcePred(), plotYieldVsF(), plotYieldVsSize()

Examples

plotEnergyBudget(NS_params, species = "Cod")

# Returning the data frame
fr <- plotEnergyBudget(NS_params, return_data = TRUE)
str(fr)

sizespectrum/mizerExperimental documentation built on Oct. 20, 2024, 4:09 a.m.