Files in sjdlabgroup/MutSigTools
Mutational signature analysis
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
Meta/vignette.rds
MutSigTools.Rproj
NAMESPACE
R/ContextSNV.R
R/addSignature.R
R/bed_to_granges.R
R/caseControlSig.R
R/clusterSignature.R
R/confidenceSig.R
R/deleteSignature.R
R/enrichSig.R
R/mergeSignature.R
R/persistSig.R
R/processSNV.R
R/renameSignature.R
R/signatureHeatmap.R
R/signaturePCA.R
R/signature_tSNE.R
R/vcfToSNV.R
README.Rmd
README.md
README.pdf
bibliography.bib
data/contextfreq.cases_test.rda
data/contextfreq.controls_test.rda
data/contextfreq.sample_test.rda
data/signatures.cosmic.2019.rda
data/snv_sample.rda
doc/.Rapp.history
doc/mutsigtools_vignette.R
doc/mutsigtools_vignette.Rmd
doc/mutsigtools_vignette.tex
inst/extdata/context_testFile.bed
inst/extdata/test.vcf
man/addSignature.Rd
man/caseControlSig.Rd
man/clusterSignature.Rd
man/confidenceSig.Rd
man/contextSNV.Rd
man/deleteSignature.Rd
man/enrichSig.Rd
man/mergeSignature.Rd
man/persistSig.Rd
man/processSNV.Rd
man/renameSignature.Rd
man/signatureHeatmap.Rd
man/signaturePCA.Rd
man/signature_tSNE.Rd
man/vcfToSNV.Rd
vignettes/bibliography.bib
vignettes/mutsigtools_vignette.Rmd
vignettes/mutsigtools_vignette.pdf
vignettes/mutsigtools_vignette.tex
